Curator Dashboard

Nextflow pipeline to process whole genome long-read sequencing data generated in the context of ASAP project.

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• 5 months ago - by Anonymous

Core provides advanced computational analysis and consultation for high-throughput genomics and multi-omics research. Supports investigators across GW and external collaborators with experimental design, data processing, statistical analysis, and biological interpretation of next-generation sequencing datasets. Offers expertise in bulk and single-cell transcriptomics, epigenomics, variant analysis, and integrative multi-omics approaches. Develops and maintains reproducible computational pipelines and collaborates closely with researchers to translate complex genomic data into actionable biological insights.

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• 5 months ago - submitted by Hovhannes Arestakesyan

Software aplication to predict scRNA-seq coverage and scATAC-seq insertion profiles along the genome at single-cell resolution. It leverages the pre-trained multi-omics profile predictor Borzoi as a foundation model, equips it with a cell-specific decoder, and fine-tunes its sequence embeddings.

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• 5 months ago - submitted by Vasileios Konstantakos

Web-based resource for preserving and sharing pharmacokinetic data generated through preclinical and clinical HIV research.

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• 5 months ago - submitted by Anita Bandrowski

NIEHS funded biomedical knowledgebase to provide a curated collection of geospatial datasets and associated information. It enables, data discoverability, data harmonization and data re-uses of GeoSpatial datasets in the USA. GeoSpace has three core modules.

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• 5 months ago - submitted by Anita Bandrowski

Centralized, annotated repository for the Osteoarthritis Initiative (OAI) study, designed to accelerate research by organizing and linking extensive clinical, imaging (MRI/X-ray), and biomarker data. It aims to help researchers analyze knee osteoarthritis prevention, treatment, and progression.

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• 5 months ago - submitted by Anita Bandrowski

Bioinformatics knowledge base and datacenter focusing on skeletal phenotypes. Provides searchable bone phenotyping data for knockout mouse lines, interactive histomorphometry plots, and raw data, supporting research into skeletal genetics, disease mechanisms, and personalized skeletal health treatments.

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• 5 months ago - submitted by Anita Bandrowski

Web application to search data on BRCA1/2 genetic variants and corresponding clinical data from around the world. Used to search for BRCA1 or BRCA2 variants.

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• 5 months ago - submitted by Anita Bandrowski

Software tool to find combinations of objects within categories. Can be utilized in bioinformatic analyses to transform two-mode target-pathway relationships to one-mode target-target relationships to generate combination of target genes within related pathways.

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• 5 months ago - by Anonymous

Core specializes in the analysis of small organic and organometallic analytes. Provides access to mass spectrometers for all.

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• 5 months ago - submitted by Edyta Vieth

Facility provides access to nuclear magnetic resonance spectroscopy for all. Houses spectrometers ranging in field strength from 400 to 600 MHz, including two 500 MHz Brukers equipped with nitrogen-cooled Prodigy CryoProbes. New users may operate a particular spectrometer independently once they complete the required training and demonstrate the knowledge required for operating each instrument.

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• 5 months ago - submitted by Edyta Vieth

Three-dimensional (3D) common coordinate framework (CCF) and reference atlas that defines the spatial organization of cortical and subcortical structures in the adult human brain. This atlas modifies and expands the Allen Human Reference atlas (2020). This atlas parcellates the MNI152 ICBM2009b symmetric template, an averaged template from 152 young adult brains (mean age: 25.02 years, range: 18-44 years, 86 male, 66 female). The template has been sampled to 500 um3 voxel resolution and symmetrized along the right-left axis. This atlas includes annotations for all subcortical and cortical structures using a unified ontology developed for cross-species comparisons, the Harmonized Ontology of the Mammalian Brain Anatomy (HOMBA).

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• 5 months ago - submitted by Edyta Vieth

OME-Zarr is the emerging community standard image file format for cloud (S3 object store) compatible image data storage. Thus it is important to know how to access S3 hosted OME-Zarr in various image analysis and visualisation platforms.

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• 5 months ago - submitted by Edyta Vieth

Software Python package for computing intrinsic cell features from electrophysiology data. Used to compute intrinsic cell features from intracellular electrophysiology data.

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• 5 months ago - submitted by Anita Bandrowski

Offers access to instrumentation, training and services for structure determination of macromolecular molecules using single crystal X-ray diffraction and/or cryo-EM Single Particle Analysis (SPA). Instrumentation is available for initial crystallization trials, optimization of crystallization, single crystal X-ray diffraction and data collection at synchrotron radiation facilities, as well as electron microscopy grid preparation for cryo-EM (SPA), screening and data collection using a Thermo Scientific Tundra Cryo-TEM and assistance for data collection at national laboratories.

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• 5 months ago - by Anonymous

Facility permits interrogation of protein biomarkers in tissue through next-generation, quantitative histopathologic technologies. Utilizes Akoya Bioscience’s PhenoImager platform which includes multiplex IF reagent kits, multispectral imaging on the PhenoImager HT, and image analysis with inForm software.

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• 5 months ago - by Anonymous

Research facility jointly operated by the University of Pittsburgh and Carnegie Mellon University in partnership with the U.S. Census Bureau. It provides qualified researchers with access to restricted-use microdata from federal statistical agencies in a highly controlled environment, ensuring strict confidentiality through dedicated workstations without internet or external device access. By enabling analysis of detailed federal data, the center supports advanced research in fields such as economics, public health, business, social policy, political science, and demography, allowing investigators to address questions that cannot be answered with public datasets.

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• 5 months ago - submitted by Ashley Zyhowski

San Diego biotechnology company that focuses on creating user-friendly, high-resolution imaging solutions for life science research, including confocal, fluorescence, and brightfield microscopy. Specializes in developing hybrid, digital microscopes that revolutionize life science research by replacing traditional eyepieces with high-resolution iPad displays. Their microscopes, such as the Revolve and Rebel, combine upright and inverted configurations, offering versatility for fluorescence, brightfield, and tissue culture imaging.

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• 5 months ago - by Anonymous

Software R package for DNA copy number data evaluation using both their initial form (copy number as a noisy function of genomic position) and their approximation by a piecewise-constant function (segmentation), for the purpose of identifying genomic regions where the copy number differs from the norm. Pre-Process DNA Copy Number (CN) Data for Detection of CN Events.

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• 5 months ago - submitted by Astrid Deschenes

Core offers access to advanced imaging technologies, expert consultation, training, and collaborative partnerships across the School of Medicine and Washington University research community. Provides access to light and electron microscopy platforms, guidance in experimental design, sample preparation, data acquisition, quantitative image analysis, expertise, and training to enable investigators to explore cellular and tissue architecture across scales.

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• SciCrunch
• 5 months ago - submitted by Edyta Vieth