Curator Dashboard

Core used to develop custom monoclonal antibodies and obtain large scale quantities of existing ones for experiments. Core provides cell line distribution service and tests samples for mycoplasma contamination.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 23, 2022. A database of proteolytic pathways. Its goal is to contribute to the scientific community and the understanding of proteolysis by providing better tools and data to researchers and medical researchers.

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• SciCrunch
• 17 years ago - by Anonymous

An open-source C++ application that performs pair-wise DTI registration, using scalar FA map to drive the registration. Individual steps of the pair-wise registration pipeline are performed via external applications - some of them being 3D Slicer modules. Starting with two input DTI images, scalar FA maps are generated via dtiprocess. Registration is then performed between these FA maps, via BRAINSFit/BRAINSDemonWarp or ANTS -Advanced Normalization Tools-, which provide different registration schemes: rigid, affine, BSpline, diffeomorphic, logDemons. The final deformation is then applied to the source DTI image via ResampleDTI.

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• SciCrunch
• 14 years ago - by Anonymous

Scientific Instrument Services provides technical support functions including repair and maintenance of lab equipment; custom design and fabrication of new fixtures and devices using CAD, 3-D printing, and traditional machining; protocol development and performance optimization of wide variety of automated liquid handlers deployed in many of our institutions core services.Services are provided for JAX faculty.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A database of information from the Center for Tobacco Use Prevention and Research. Materials include depositions, trial testimony and opening and closing statements, expert reports, jury instructs, and verdicts. Some transcripts are rough copies and others may be marked as confidential although they no longer retain that status. This resource is in French.

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• SciCrunch
• 14 years ago - by Anonymous

Atlas that contains new anatomical, DTI, HARDI templates and probabilistic gray matter labels of the adult human brain in ICBM-152 space. Artifact-free MRI data from 72 human subjects was used in the development of the atlas. All diffusion MRI data collection was conducted using Turboprop, and spatial normalization was accomplished in a population-based fashion. A description of the contents of the atlas can be found in the Downloads link. NOTE: The files of the older IIT2 DTI Brain Template are still available. However, the new DTI template of the IIT Human Brain Atlas (v.3) is of superior quality and allows more accurate registration across subjects.

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• SciCrunch
• 14 years ago - by Anonymous

Web application for visualizing pathogen evolution.Interactive web app for visualizing phylogenomic data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A loose collection of programs and configuration options that intend to make working with data more transparent to formats. Currently available is a basic specification for NIfTI-1 for the UNIX file command and proof of concept code for the concept of treating data as an abstract concept and instantiating physical instances on demand.

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• SciCrunch
• 14 years ago - by Anonymous

A toolbox for SPM which provides routines for region of interest analysis. Features include region of interest definition, combination of regions of interest with simple algebra, extraction of data for regions with and without SPM preprocessing (scaling, filtering), and statistical analyses of ROI data using the SPM statistics machinery.

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• SciCrunch
• 14 years ago - by Anonymous

Software tools for manipulating Common Assembly Format files text format for describing sequence assemblies,that can be downloaded from the Sanger ftp site.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A portal with listings of continuing medical education opportunities such as radiology, pediatrics, and HIV/AIDS specializations.

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• SciCrunch
• 16 years ago - by Anonymous

A non-invasive, long-range eye tracking system for use in the fMRI environment. Some features of the system include: * Elaborate faraday shielding and fiber optics to avoid noise in high-field magnets. * Includes stimulus presentation software ?Experiment Center? and is compatible with 3rd party products such as ?Presentation? by NeuroBS. * Utilizes mirror box customized for large field of view. * Includes powerful analysis software ?BeGaze2? for graphical and statistical analysis of eye movements. * Includes fixation, saccade and blink detection, and area-of-interest based statistics * Real-time data available via digital or analog output

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• SciCrunch
• 14 years ago - by Anonymous

Software tool to generate BED coverage tracks from BAM files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

R package with tools that use probabilistic inference of ChIP-Seq. It follows an empirical Bayes mixture model approach.

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• SciCrunch
• 13 years ago - by Anonymous

A Matlab / Octave-based mesh generation toolbox designed for easy creation of high quality surface and tetrahedral meshes from 3D volumetric images. It contains a rich set of mesh processing scripts/programs, functioning independently or interfacing with external free meshing utilities. Iso2mesh toolbox can operate directly on 3D binary, segmented or gray-scale images, such as those from MRI or CT scans, making it particularly suitable for multi-modality medical imaging data analysis or multi-physics modeling.

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• SciCrunch
• 14 years ago - by Anonymous

Web based graphical user interface to the EMBOSS suite of bioinformatics tools.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

An application ontology devoted to the standardized recording of phenotypic data related to hemorrhagic disorders.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for numerical computation providing a powerful computing environment for engineering and scientific applications. It includes hundreds of mathematical functions and has a high level programming language allowing access to advanced data structures, 2D and 3D graphical functions.

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• SciCrunch
• 11 years ago - submitted by Jamie Li

Software library for handling sequence graphs in Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A suite of software tools for analyzing and manipulating next-generation sequencing datasets, such as FASTQ, BED and BAM format files. These tools provide a stable and modular platform for data management and analysis.

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• SciCrunch
• 13 years ago - by Anonymous