Curator Dashboard

Genomics and transcriptomics core at the UCD Genome Center provides high throughput sequencing, genotyping, single-cell multi-omics and spatial transcriptomics services, training and consultation. Initial consultations are free. The lab uses liquid handling robots to minimize sample handling variation and to provide fast turnaround times.

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• SciCrunch
• 7 years ago - submitted by Edyta Vieth

The American Parkinson Disease Association, Inc. was founded in 1961 to ease the burden and find a cure for Parkinson''s disease. The organization focuses its energies on research, patient support, education and raising public awareness of the disease.
It offers Parkinson Disease news and updates, as well as connecting users to other Parkinson-related resources, such as referral centers, Parkinson events, and research grant information for the scientific community. It also offers access to Parkinson-related publications, as well as Young Onset Parkinson-related resources.
American Parkinson Disease Association Inc. is headquartered in Staten Island, New York.
:NIF thanks the
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:Parkinson''s Disease Foundation
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:for their referral of this resource to us.

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• SciCrunch
• 17 years ago - by Anonymous

Open source tool for multi-modal medical and brain data visualization. It is a tool for the scientific user and a powerful framework for the visualization researcher. It is written in Standard C++ and uses a number of portable libraries (e.g. Qt, Boost and OpenSceneGraph). It runs on common GNU/Linux operating systems, Mac OSX and Windows.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Web application for displaying high-resolution image series coupled with overlaid atlas delineations. Online pan-and-zoom type viewer with three operating modes: Display series with atlas overlay, both linear and nonlinear alignments are supported; Create or edit nonlinear alignments; Create markup which can be exported as MeshView point clouds or to Excel for further numerical analysis.

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• RRID
• 3 years ago - submitted by Gergely Csucs

Software package that defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

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• SciCrunch
• 13 years ago - by Anonymous

An atlas intended to provide accurate data in terms of specific uptake location to make the BP quantitation. The VOIs were manually drawn with software Analyze 9.0 (Mayo Clinic) in 18F-DOPA brain image after spatial normalization with a 18F-DOPA Template. Each striatum was divided into 6 sub-regions: ventral caudate, anterior dorsal caudate, posterior dorsal caudate, ventral putamen, anterior dorsal putamen and posterior dorsal putamen.

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• SciCrunch
• 11 years ago - submitted by Kristen Jensen

Open source relational database of signaling and metabolic molecules and their relations organized into biological pathways and processes. Core unit of Reactome data model is the reaction. Entities (nucleic acids, proteins, complexes, vaccines, anti-cancer therapeutics and small molecules) participating in reactions form network of biological interactions and are grouped into pathways including classical intermediary metabolism, signaling, transcriptional regulation, apoptosis and disease. External domain expert provides expertise, curator formalizes it into database structure, and external domain expert reviews representation. System of evidence tracking ensures that all assertions are backed up by primary literature. Website is designed to give the user graphical map of known biological processes and pathways that is also an interface. Database and website enable to find, organize, and utilize biological information to support data visualization, integration and analysis.

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• RRID
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 31,2025. Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

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• SciCrunch
• 13 years ago - by Anonymous

BioXpress is a gene expression and cancer association database in which the expression levels are mapped to genes using RNA-seq data obtained from The Cancer Genome Atlas, International Cancer Genome Consortium, Expression Atlas and publications. BioXpress can be searched by gene name or cancer type. To search the database by gene name, select the appropriate identifier type from the dropdown menu and type in the corresponding identifier in the adjacent text box. The results are computed and presented to the user with information such as variable expression levels and tumor expression. To search by cancer type, select the desired type from the dropdown menu, such as "Cancer Type", "Significant", "Expression", "Adjusted p-value" and "p-value". Results are shown in a graph displaying the top 10 differentially expressed genes for the specified cancer type in terms of the frequency of significant altered expression between the tumor and normal pairs.

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• SciCrunch
• 11 years ago - by Anonymous

Provides computational support to Emory investigators with large datasets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Voluntary, non-governmental, non-profit pharmacologist association promoting international cooperation, sponsoring international and regional activities, encouraging free exchange of scientists and ideas, developing public awareness, establishing advisory committees. Has official relations with the World Health Organization (WHO). Helps pharmacologists to participate with other branches of science in international activities, either directly or under ICSU, WHO and UNESCO. Member of the International Council for Science (ICSU) and participates in the work of its scientific committees. Has its own publishing program. Pharmacology International, is published every June and December. Member Directory is maintained continually, as an online resource. Provides IUPHAR Receptor Database, major on-line repository of characterization data for receptors and drugs, and the IUPHAR Ion Channels Database. Official Reports from The IUPHAR Committee on Receptor Nomenclature and Drug Classification are published in Pharmacological Reviews. IUPHAR World Congresses of Pharmacology are held every few years.

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• SciCrunch
• 16 years ago - by Anonymous

A software package to facilitate the use of statistical learning on NeuroImaging data. Namely NiLearn leverages the scikit-learn Python toolbox for multivariate statistics with applications such as predictive modelling, classification, decoding, or connectivity analysis.

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• SciCrunch
• 14 years ago - by Anonymous

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• NIF
• 3 years ago - by Anonymous

Software package that fits heterogeneous error models for analysis of microarray data

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• SciCrunch
• 13 years ago - by Anonymous

A 4D adult brain extraction and analysis toolbox with graphical user interfaces to consistently analyze 4D adult brain MR images. Single-time-point images can also be analyzed. Main functions of the software include image preprocessing, 4D brain extraction, 4D tissue segmentation, 4D brain labeling, ROI analysis. Linux operating system (64 bit) is required. A computer with 8G memory (or more) is recommended for processing many images simultaneously. The graphical user interfaces and overall framework of the software are implemented in MATLAB. The image processing functions are implemented with the combination of C/C++, MATLAB, Perl and Shell languages. Parallelization technologies are used in the software to speed up image processing.

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• SciCrunch
• 14 years ago - by Anonymous

Web server to search for tRNA genes in genomic sequence. If you would like to run tRNAscan-SE locally, you can get the UNIX source code (gzip''d tar file).

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• SciCrunch
• 14 years ago - by Anonymous

An R software package implementing a bayesian sparse factor model for the joint analysis of paired datasets, the gene expression and drug sensitivity profiles, measured across the same panel of samples, e.g. cell lines.

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• SciCrunch
• 13 years ago - by Anonymous

A self-contained, platform-independent application that automatically extracts the provenance information from an image header (such as a DICOM image) and generates a data provenance XML file with that information.

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• SciCrunch
• 14 years ago - by Anonymous

The Korean Genome and Epidemiology Study (KoGES) is a large prospective cohort study aimed at investigating the genetic and environmental risk factors of major chronic diseases in Korea. As of November 2017, epidemiological data of more than 23 million participants are available for researchers. Researchers who want to access the KoGES data may do so via the online data sharing service available at http://cdc.go.kr/CDC/ or http://nih.go.kr/NIH_NEW. After submitting institutional review board approval documentation, research proposal and a list of requested variables, researchers can download the data within 7 days. In addition, researchers who want to use genomic data and/or biospecimens, together with epidemiological data may do so via the one stop portal services of Korea Biobank Network (KBN) available at http:// koreabiobank.re.kr The Korean Genome Epidemiology Study (KoGES) is a principal cohort study providing valuable evidence for the prevention of major chronic diseases such as hypertension, obesity, and diabetes in Korea Cohort Profile: The Korean Genome and Epidemiology Study (KoGES). Consortium https://doi.org/10.1093/ije/dyv316 waiting for the submitter insufficinet information Cohort Profile: The Korean Genome and Epidemiology Study (KoGES) Consortium

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• RRID
• 3 years ago - submitted by Jihye Choi

A genome browser framework which gives an open browsing experience, open data access, collaborative work support, and a framework to import annotations. Multiple data access approaches are supported for external platforms to retrieve data from ABrowse. This resource also contains an online user-space in which users can create, store and share comments, annotations and landmarks.

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• SciCrunch
• 13 years ago - by Anonymous