Curator Dashboard

School of Medicine service center operated by Department of Genetics.Set up to facilitate massive scale genomics at Stanford and supports omics, microbiome, sensor, and phenotypic data types.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software extensible environment for interactive and reproducible computing, based on Jupyter Notebook and Architecture. Next generation user interface for Project Jupyter offering all familiar building blocks of classic Jupyter Notebook (notebook, terminal, text editor, file browser, rich outputs, etc.) in flexible and powerful user interface. Can be extended using npm packages that use our public APIs., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID
• 3 years ago - by Anonymous

Software Python library to store NumPy arrays in TIFF (Tagged Image File Format) files, and read image and metadata from TIFF-like files used in bioimaging. Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, DNG, STK, LSM, SGI, NIHImage, ImageJ, Micro-Manager NDTiff, FluoView, ScanImage, SEQ, GEL, SVS, SCN, SIS, BIF, ZIF (Zoomable Image File Format), QPTIFF (QPI, PKI), NDPI, and GeoTIFF files.

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• RRID
• 3 years ago - by Anonymous

Software Python Imaging Library adds image processing capabilities to your Python interpreter. This library provides extensive file format support, efficient internal representation, and image processing capabilities. Core image library is designed for fast access to data stored in few basic pixel formats. It should provide solid foundation for general image processing tool.

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• RRID
• 3 years ago - by Anonymous

Software provides set of wrapper functions for integration between ImageJ2 and Python. Supports original ImageJ API and data structures. Used to combine ImageJ and ImageJ2 with other tools available from Python software ecosystem, including NumPy, SciPy, scikit-image, CellProfiler, OpenCV, ITK and many more.

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• RRID
• 3 years ago - by Anonymous

Collection of foundational software libraries, upon which ImageJ2 and Fiji are built. It is a collaboration of projects providing software for scientific computing in effort to cooperate and reuse code.

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• RRID
• 3 years ago - by Anonymous

Open source project and Python package that introduces labels in form of dimensions, coordinates, and attributes on top of raw NumPy-like arrays, which allows for more intuitive, more concise, and less error-prone user experience. Includes large and growing library of domain agnostic functions for advanced analytics and visualization with these data structures.

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• RRID
• 3 years ago - by Anonymous

Software tool as Python GUI and wrapper for control of visual stimuli designed using Psychopy libraries.

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• RRID
• 3 years ago - by Anonymous

Software Python 2D Maxima finding algorithm. Re-implementation of Java plugin for ImageJ/Fiji.

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• RRID
• 3 years ago - by Anonymous

Software Python package to read, write, create, and plot ImageJ ROI format, an undocumented and ImageJ application specific format to store regions of interest, geometric shapes, paths, text, and whatnot for image overlays.

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• RRID
• 3 years ago - by Anonymous

Database reports all data from German 'Protection against Infection Act'. Robert Koch Institute maintains database of cases of notifiable diseases, and confirmation of pathogens, reported under the German ‘Act on the Prevention and Control of Infectious Diseases in Man’. SurvStat@RKI 2.0 is application that allows retrieval of aggregated data from limited version of German notification system database. Queries can be created individually or customized from pre-defined queries to generate tables, charts, and maps.

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• RRID
• 3 years ago - by Anonymous

Software R package for developing heart rate variability analysis. Allows to import data files containing heartbeat positions in broadly used formats; eliminating outliers or spurious points present in time series with unacceptable physiological values; plotting HRV data and performing time domain, frequency domain and nonlinear HRV analysis.

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• SciCrunch
• 3 years ago - submitted by xose a. vila

Offers analytical services, technical and scientific consulting and training, as well as pay-per-use research equipment.Provides scientific expertise and support for standard and customized assays, from initial study design to final interpretation and statistical analysis of experimental data. Services also include clinical sample acquisition, processing and archival for conducting inter-disciplinary translational research applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Integrates laboratory research with clinical medicine.Creates and supports multidisciplinary programs that promote discovery and innovation in basic sciences and accelerates introduction and application of new technologies for use in basic research and clinical medicine.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Offers instrumentation and technical capabilities and plays significant consultative role in application of these technologies to basic science projects.Genomic Services include Oligo Synthesis,Gene Expression,Real-Time PCR,PyroSequencing,Next-Generation Sequencing (NGS),DNA Sequencing (Sanger)/Fragment AnalysisSingle Cell Genomics,RNA-DNA QC - Bioanalyzer and Fragment Analyzer QC.Protein Services include Peptide Synthesis,Mass Spectrometry,Protein Analytics - Mass Mapping/Edman Sequencing,Surface Plasmon Resonance (Biacore).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core houses 5 Varian NMR Spectrometers including Inova 300, Varian 400, Neo 400, Inova 600, Inova 500.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides histological services as well as technical support. Equipped with ventilated working areas and equipment to prepare, process and stain frozen or paraffin embedded specimens. Instrumentation include VIP Tissue Processor, BIOCARE NxGen Decloaking Chamber, Rotary Microtome, Staining Center, Leica Cryostat, Zeiss Axio Microscope/Camera Software, Leica Bond-Max Immunostainer, Leica Autostainer XL, General Data Laser Cassette Marker.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to create face stimuli for experiments. Used for making 3D characters.

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• RRID
• 3 years ago - by Anonymous

Software toolkit of three dimensional models and software to study face perception. Collection of plugins used with MakeHuman to create face stimuli for experiments.

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• RRID
• 3 years ago - by Anonymous

Web application that allows users to view and explore brain cell data. Composed of three, interlinked tabs. GeneExp allows users to plot expression of one or two genes in Slide-seq atlas. SingleCell allows users to plot gene expression in snRNA-seq atlas. CellSpatial shows spatial localization of snRNA-seq cell types in Slide-seq dataset. Used to visualize, interact with, and download data.

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• dkNET
• 3 years ago - submitted by Maryann Martone