Curator Dashboard

Interactive database of protein protein interactions modeled by AlphaFold multimer. Classifier-curated database of AlphaFold-modeled protein-protein interactions.

• Resource
• RRID
• 1 year ago - by Anonymous

International Neuroinformatics Coordinating Facility (INCF) Funding is an overview of funding opportunities for neuroinformatics research and infrastructure. This list is not comprehensive and we are continually adding to it.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Offers high throughput genomics services, technical expertise and support with experimental design and protocol development. Includes Nucleic Acid Services, genetic and genomic DNA analysis with sequencing available in standard, high-throughput and next-generation formats, Genome-wide MicroArray or RNA-seq and targeted RNA analysis, Next Generation Sequencing,Drop Seq.

• Resource
• SciCrunch
• 7 years ago - submitted by Edyta Vieth

Software R package for detection of differentially bound regions in ChIP-seq data with sliding windows, with methods for normalization and proper FDR control.

• Resource
• RRID
• 1 year ago - by Anonymous

Software pipeline to parse, map, quantify and manage large quantities of sequence data. CASHX is a set of tools that can be used together, or as independent modules on their own. The reference genome alignment tools can be used with any reference sequence in fasta format. The pipeline was designed and tested using Arabidopsis thaliana small RNA reads generated using an Illumina 1G.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool for analysis of Alternative Splicing events and calculation of weighted transcripts per million values TPM on gene level. RNA-seq analysis method that quantifies AS events of any complexity without loss of accuracy. Used for accurate profiling AS to find misregulation present in human diseases.

• Resource
• RRID-Legacy
• 7 years ago - by Anonymous

Core offers services and instruments. Offers Scanco μCT 100 micro-computed tomography system which provides high resolution scans of radio opaque specimens such as bone, contrasted soft tissue, bio materials, etc.

• Resource
• RRID
• 1 year ago - submitted by Edyta Vieth

Donate a strain to The Jackson Laboratory Repository. Why donate a strain? * Donating reduces your costs of maintaining strains, lab personnel, shipping and resources. * Each donated strain is cryopreserved, protecting against accidental loss and genetic contamination. * Each donated strain is rederived to a high health status and may be resupplied to donors (up to 3 breeder pairs as long as we have live mice available) * Donating fulfills NIH obligations to share mice. How strain donation works: Strains are submitted by investigators for distribution to the scientific community. All repository strains are cryopreserved. All strains are evaluated monthly by the Genetic Resource Committee (GRC). The GRC is made up of staff scientists and resource managers from The Jackson Laboratory. The GRC recommends which strains are most appropriate to include in the Repository. You will be notified by email after your strain has been reviewed. Donation evaluation criteria * Importance of its current use for research, publication history, and current demand * Importance of its anticipated or potential future use * Difficulty of maintenance relative to scientific value * Existence and reliability of other resources that would ensure its survival * Difficulty of re-creating the strain relative to the time and effort required for its importation and preservation

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Computational workflows for reproducible untargeted metabolomics data processing pipeline.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Xinsong Du

MCDB Imaging Facility in the Biological Sciences Building provides microscopes available to any University of Michigan researcher. Access to scope time granted after appropriate training. Provides microscope equipment, image capture systems, software to assist researchers with their sample imaging.

• Resource
• RRID
• 1 year ago - submitted by Edyta Vieth

Inside e-Source you will find 20 interactive chapters with authoritative answers to methodological questions on behavioral and social science research. With contributions from a team of international experts, this anthology provides the latest information on addressing emerging challenges in public health. Book contents include: Setting the Scene, Describing How, Explaining Why, What Works, Emerging Issues. Tables, Figures, Exercises and Examples are included. Login for enhanced functionality. Contents: * Appropriate Research Methods * ''Science'' in the Social Sciences * Design Decisions in Research * Theory Development * Social and Behavioral Theories * Sample Surveys * Social Survey Data Collection * Administrative Data Systems * Observational Studies * Qualitative Methods * Conversation Analysis * Software and Qualitative Analysis * Clinical Trials * Cluster Unit Randomized Trials * Ethical Challenges * Multilevel Modeling * Objective Measurement of Subjective Phenomena * Measuring Socioeconomic Status * Evaluating the Quality of Health Care * Patient-Reported Outcomes

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Software tool for visual inspection and processing of big image data. Enables loading of Tiff and Hdf5 based image data. BDC supports cropping and saving of big image data including binning and bit depth conversion. Used for analysis of TB sized image data like light sheet microscopy or electron microscopy.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Lucia Garcia del Valle

Blueberry_DArTag_BI_Cornell_University 1.0 is a DArTag genotyping panel version 1 for blueberry targeting 3000 loci. DArTag assay uses custom designed oligos to amplify targeted SNPs, and their flanking sequences, prior to NGS sequencing. The sequenced amplicons are demultiplexed and targeted SNPs/haplotypes are analysed using DArT P/L’s proprietary pipeline (https://www.diversityarrays.com/services/targeted-genotying/). The markers were selected from a diverse set of 31 cultivated blueberry SHB and NHB parents and founders from North American breeding programs. The panel is suitable for genotyping tetraploid blueberry for breeding decisions and selection. Usage of the panel for hexaploid blueberry (i.e., Rabbit Eye) and diploid cranberry resulted in higher missing data and fewer polymorphic data points. Usage of the panel outside of Vaccinium corymbosum is likely to result in higher missing data and fewer data points. Panel developed in collaboration between DArT and Breeding Insight at Cornell University.

• Resource
• RRID
• 1 year ago - submitted by Moira Sheehan

The Hepatitis C Virus Database (HCVdb) is a cooperative project of several groups with the mission of providing to the scientific community studying the hepatitis C virus a comprehensive battery of informational and analytical tools. The Viral Bioinformatics Resource Center (VBRC), the Immune Epitope Database and Analysis Resource (IEDB), the Broad Institute Microbial Sequencing Center (MSC), and the Los Alamos HCV Sequence Database (HCV-LANL) are combining forces to acquire and annotate data on Hepatitis C virus, and to develop and utilize new tools to facilitate the study of this group of organisms.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Open source machine learning library based on Torch library, used for applications such as computer vision and natural language processing. Software Python package that provides tensor computation with strong GPU acceleration and deep neural networks built on tape-based autograd system.

• Resource
• RRID-Legacy
• 7 years ago - submitted by Nathan Anderson

ABSL3 core is specialized in environments designed to facilitate safe research with Risk Group-3 microbial pathogens, which pose significant risk of airborne transmission and serious disease. Core safe for conducting high-level infectious disease research.

• Resource
• RRID
• 1 year ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE, documented on August 18, 2016. ASH's video library includes a number of films produced on various topics, including ASH''s history and award winners, Society programs such as the Clinical Research Training Institute, and a trailer and clips from the hematology documentary Blood Detectives, which aired on Discovery Health. These videos were created for educational purposes, and we encourage members of the hematology community to share them with others.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Software toolkit for creating reusable datasets that are both human and machine readable, combining spreadsheets with schemas including classes, their attributes, type of each attribute, and possible relationships between instances of classes.Consists of format for describing schemas for spreadsheets, numerous data types for science, syntax for indicating class and attribute represented by each table and column in workbook, and software for using schemas to rigorously validate, merge, split, compare, and revision datasets. Used for supplementary materials of journal article, as well as for emerging domains which need to quickly build new formats for new types of data and associated software with minimal effort.

• Resource
• SciCrunch
• 7 years ago - submitted by Jonathan Karr

Core facility provides nascent RNA sequencing using four techniques: Bru-seq, BruChase-seq, BruUV-seq, and BruDRB-seq. This service is all-inclusive, starting with cells and ending with basic data analysis. In addition, users will have access to our exclusive pipeline to perform further data analysis. Our areas of expertise are RNA isolation, cDNA library preparation, and sequencing data analysis.

• Resource
• RRID
• 1 year ago - submitted by Edyta Vieth

Tool for helping people identify and locate online repositories of research data. Users and bibliographers create and curate records that describe data repositories that users can search. * What repositories are appropriate for a researcher to submit his or her data to? * How do users find appropriate data repositories and discover datasets that meet their needs? * How can librarians help patrons locate and integrate data into their research or learning? Databib attempts to address these needs for the research community, including: * data users * data producers * publishers and professional societies * librarians * research funding agencies Are you familiar with a data repository that isn''t included in Databib? Please consider submitting a new record. You can suggest a repository for us to catalog by simply entering its title, URL, authority, and a subject for it... and we''ll do the rest!

• Resource
• SciCrunch
• 15 years ago - by Anonymous