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qPCR instrument with basic features ideal for those new to qPCR or those who have limited budget. System offers quality, reliability, and advanced user experience of QuantStudio family of instruments.
Software tool to construct Data Envelopment Analysis frontiers for calculation of technical and cost efficiencies and also for calculation of Malmquist TFP Indices.
Software to detect regions of interests and distinguishes cells and sub-cellular objects within these target regions from immunohistochemistry specimen. Used for digital pathology image analysis.
Project to develop and utilize imaging infrastructure to create human brain cell census and instantiate it in coordinate system that will enable immediate impact of all in vivo MRI studies of human brain. Consortium for creating cellular census of human cerebral cortex.
Software tool as purity ploidy estimator for whole genome sequenced data. Used for copy number calling and determination of sample purity.
Software tool for detecting structural variants in sequencing data using genome wide local assembly. Genome wide detection of structural variants and indels by local assembly. Used for detecting SVs from short read sequencing data using genome wide local assembly with low memory and computing requirements.
Software tool for rapid detection of structural variants and indels for germline and cancer sequencing applications. Used to call structural variants and indels from mapped paired end sequencing reads.
Repository of many types and sources of data including, but not limited to, assessments, imaging, wearable, and biological samples, collected from research projects at the Centre for Addiction and Mental Health. Data that individuals choose to share to advance mental health.
Software tool set for simulating and evaluating SVs, merging and comparing SVs within and among samples, and includes various methods to reformat or summarize SVs. Used for for SV simulation, comparison and filtering.
Software package for validating sample identity in next generation sequencing studies within and across data types. Used for identifying next generation sequencing data files from the same individual. Used for checking sample matching for NGS data.
Software pipeline for quantification of Tumor Immune contexture from human RNA-seq data.
Software framework for unsupervised integration of multi-omics data sets. Used for discovering principal sources of variation in multi omics data sets.
Software R toolbox for Archetypal Analysis and Pareto Task Inference for unsupervised characterisation of single cell data. Allows describing continuum of cell states by identifying representative cells with most distinctive expression. Detecting which genes and functional annotations make those cells distinctive gives marker genes and predicted functions for each state.
Supplier for research frogs for biomedical research community worldwide. Supplies: Xenopus laevis and tropicalis frogs, frog ovary, oocytes, eggs, testes.
Software DNA and RNA sequence analysis pipeline.
Software tool as variant caller for SNVs and small indels. Implemented as software application written in C++ .
Center coordinates ideas and investments to advance and democratize access to Stanford cores, instrumentation, scientific and technical staff, allowing users to perform innovative, rigorous experiments.
Computerized, non invasive system for measuring mouse and rat blood pressure. Blood pressure analyzer is standard in transgenic and knockout mouse research.
Software is part of MouseOx Plus pulse oximeter system.