Curator Dashboard

Core Facility offers equipment for wide range of light microscopy applications as well as access to advanced bioimaging software. Specialized staff offers personal training and assistance.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core to uncover and interrogate important molecular pathways in cancer. Offers training scientists in all stages of modern microscopical research from advice on experimental design and sample preparation, basic and advanced microscope operation and data acquisition through to quantitative image analysis and interpretation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Method extending ’guilt by association’ principle to literature information by using Bayesian framework to suggest diseases associated with overlooked metabolites.

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• RRID
• 3 years ago - submitted by Maxime Delmas

Software R package for converting and retrieving information of miRNAs in different miRBase versions. Used for converting and retrieving miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. Can process huge number of miRNAs in short time without other depends.

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• RRID
• 3 years ago - submitted by dongliang leng

Software tool bridges in vitro drug screening with in vivo drug and biomarker discovery. Predicts in vivo or cancer patient drug response and biomarkers to enrich for response from cell line screening data. Builds model using ridge regression, and enables biomarker discovery by imputing drug response in large cancer molecular datasets. Enables drug specific biomarker identification by correcting for general level of drug sensitivity shared among the population.

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• RRID
• 3 years ago - submitted by dongliang leng

Software connectivity mapping based drug repurposing tool that identifies drugs that can potentially reverse query disease phenotype or have similar functions with query drugs.

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• RRID
• 3 years ago - submitted by dongliang leng

Web tool for transcriptome wide microRNA target prediction including lncRNAs.Used for whole transcriptome human microRNA target predictions based on the comprehensive GENCODE gene annotation, including long non-coding RNA genes. Coding genes are also covered, including atypical regions such as 5'UTRs and CDS. MicroRNA family definitions and names are consistent with TargetScan. Site conservation is aluated based on 46 vertebrates species.Map of putative microRNA target sites in the long non-coding transcriptome.

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• RRID
• 3 years ago - submitted by dongliang leng

Software R package for unified access to computational methods for estimating immune cell fractions from bulk RNA sequencing data.

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• RRID
• 3 years ago - submitted by dongliang leng

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• NIF
• 3 years ago - by Anonymous

Offers instrumentation dedicated to characterizing biomolecular conformations and interactions, as well as equipment for isolation and purification of macromolecules for subsequent detailed biophysical analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core was established to provide infrastructure to support Research Project Leaders and principle investigators associated with the Dr. Richard J. Bellucci Translational Hearing Center to conduct auditory and vestibular research across the full range of experimental model systems, from single molecule analysis to whole organism models. We also offer access to our services and instruments to outside users.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software platform for modelling and simulation of agricultural systems. Contains suite of modules that enable simulation of systems for diverse range of plant, animal, soil, climate and management interactions. Used to simulate biophysical processes in agricultural systems, particularly as it relates to the economic and ecological outcomes of management practices in the face of climate risk.

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• SciCrunch
• 3 years ago - by Anonymous

Core for conducting metabolomics studies on variety of biofluids and tissue extracts from plant and animal sources. Provided instruments include Agilent 5975C series GC-MSD, Bruker NEO 600 NMR, Thermo Exactive Plus, Thermo Orbitrap Exploris 120, Thermo Orbitrap Exploris 240, Thermo TSQ Quantis Plus, Thermo Orbitrap Fusion Lumos Tribrid.

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• RRID
• 3 years ago - by Anonymous

Deputy cabinet level agency directly under the State Council of China. Responsible for collection, investigation, research and publication of statistics concerning the nation's economy, population and other aspects of the society.

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• RRID
• 3 years ago - submitted by xianhui ran

Software package implements Bayesian multilevel models in R using probabilistic programming language Stan.

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• SciCrunch
• 3 years ago - by Anonymous

The Codes for the Administrative Divisions of China define 6-digit codes for each of the administrative regions from the province level down to the county level.

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• RRID
• 3 years ago - submitted by xianhui ran

Division codes for statistic use consist of administrative division codes and another 6 digits to identify administrative divisions of China.

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• RRID
• 3 years ago - submitted by xianhui ran

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• NIF
• 3 years ago - by Anonymous

Software Python based tool that registers the template brain (e.g. from the Allen Reference Atlas) to the sample image.Automated 3D brain registration with support for multiple species and atlases.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Software Fiji plugin for registering thin serial sections: coronal, sagittal, horizontal, to compatible atlases including Allen Mouse Common Coordinate Framework, Waxholm Rat Brain Atlas, and all BrainGlobe atlases.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth