Curator Dashboard

Software tool for data independent MS/MS deconvolution for comprehensive metabolome analysis. Universal program for untargeted metabolomics that supports multiple instruments (GC/MS, GC/MS/MS, LC/MS, and LC/MS/MS) and MS vendors (Agilent, Bruker, LECO, Sciex, Shimadzu, Thermo, and Waters). Used for untargeted metabolomics and lipidomics supporting any type of chromatography/mass spectrometry methods.

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• 3 years ago - by Anonymous

Web based tool for multi-omics integration via intuitive visual analytics. Web based platform for visual analytics of multi-omics data to allow researchers to fuse statistical and visual streams of evidence together to make more informed judgements. Enables to dissect large and complex multi-omics datasets by facilitating pattern recognition and cognitive reasoning through intuitive visual analytics.

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• 3 years ago - by Anonymous

Open source software Python library for sensitivity analysis. Useful in systems modeling to calculate effects of model inputs or exogenous factors on outputs of interest.

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• 3 years ago - by Anonymous

Software MATLAB pipeline that produces CNN-based segmentations of striatal regions of brain based on structural T1w image.

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• 3 years ago - by Anonymous

Software tool for resting state functional connectivity analyses. Allows to get optimal LPF-FD and GEV-DV volume censoring parameters for specified multiband resting state fMRI dataset.

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• 3 years ago - by Anonymous

Web service for statistics with automated data analysis mode.

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• 3 years ago - by Anonymous

Open source software Python application for high resolution analysis of metagenomes using distance trees. Tree based, taxonomy agnostic tool for identification of biologically relevant clades from shotgun metagenomic sequencing. Used for phylogenetic analysis of shotgun metagenomic data.

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• 3 years ago - by Anonymous

BX51WI is for all physiological experiments such as patch clamping and intravital microscopy. Fixed stage and vibration free frame design ensures stability throughout experiment. Use of infrared light protects living cells and offers high penetration depths of thick tissue slices, while high NA optics allow magnification changes without moving objective.

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• 3 years ago - by Anonymous

Temperature controller. Each channel supplies up to 22 watts into load of 10 ohms. Heat set point is controlled automatically in Auto mode via thermistor feedback. Loop speed selector provides three feedback response times to optimize tp thermal stability of device being heated. Heat set-point may also be manually controlled in Manual mode.

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• 3 years ago - by Anonymous

Code is written to be run with Matlab version r2020b or higher. Model accepts wave assay pulse amplitude data, and simultaneously solves and fits protofilament deflection models to deduce fundamental biophysical properties of microtubule protofilaments.

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• 4 years ago - submitted by Lucas Murray

Convolutional neural network that calculates 3D positions of user-defined anatomical landmarks on behaving animals from videos taken at multiple angles. Works on recorded video data from multiple cameras. Used for 3D markerless pose estimation and tracking.

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• 4 years ago - submitted by Kevin Chavez Lopez

Research education program to build sustainable national workforce of rehabilitation researchers equipped with basic data science skills in five years.

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• 4 years ago - by Anonymous

Human tissue biorepository offering procurement and distribution services for samples obtained from patients with hematologic malignancies.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Facility housed within Center for Genes, Environment and Health, provides Next-Gen Sequencing services from expert planning through data analysis including RNA-Seq, Whole Exome Sequencing, Single-Cell sequencing and customized panels.Data is stored onsite and is ready for future data mining by our team or others when needed. Our team is trained to utilize both Illumina and Thermo Ion Sequencing Platforms, including many other technologies, to provide the best mix of capabilities for your genomics needs.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Genomics Core facility in Richmond VA, maintains instrumentation to support advanced sample/library preparation, high-throughput sequencing, real-time PCR and analysis.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software tool for transforming 2D poses to 3D coordinates on labaratory animals. Used for kinematic studies of laboratory animals. Tracking movements in three dimensions from behaving flies, mice, rats, and non-human primates.

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• 4 years ago - submitted by Samantha White

Core provides data management and analysis services for UF Scripps community as well as for external collaborators. Offers scientific support to assist in experimental design, analysis, integration and dissemination of biomedical data and knowledge. Supports data analysis for samples processed at Genomics, Proteomics, and Neurobehavior cores.

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• SciCrunch
• 4 years ago - submitted by Edyta Vieth

Software package to indicate if two groups are significantly different. Used to add significance brackets to ggplots.

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• 4 years ago - by Anonymous

Software as isotope natural abundance correction algorithm that is needed especially for high resolution mass spectrometers. Natural abundance correction of mass spectrometer data.

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• 4 years ago - by Anonymous

Software set of acquisition and data processing tools. LC/MS analytical software. Enables control of multi-channel LC, single quadrupole, triple quadrupole and high-resolution LC-MS systems, as well as IC and GC systems.

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• 4 years ago - by Anonymous