Curator Dashboard

Software package to make scRNA-seq plot.

• Resource
• RRID
• 3 years ago - by Anonymous

THIS TEST is a

• Resource
• NIF
• 3 years ago - by Anonymous

Software tool for high throughput bacterial cell detection and quantitative analysis. Used to analyze bacterial cells. Used to process images derived from variety of microscopy experiments with special emphasis on large image sets. Performs intensity and morphology measurements as well as customized detection of poles, septa, fluorescent foci, and organelles, determines their sub-cellular localization with sub-pixel resolution, and tracks them over time.

• Resource
• RRID
• 3 years ago - by Anonymous

Software R package for calling hypermethylated variant epiallele frequencies at level of genomic regions or individual cytosines in next-generation sequencing data using binary alignment map files as input. Used for sensitive allele specific methylation analysis in next generation sequencing data. Used for sensitive detection, quantification and visualisation of mosaic epimutations in methylation sequencing data.

• Resource
• RRID
• 3 years ago - submitted by Oleksii Nikolaienko

Publicly held biotech company offering discovery and translational research solutions. NanoString's products include the nCounter® Gene Expression System, the GeoMx® Digital Spatial Profiler, the CosMx™ Spatial Molecular Imager, and the AtoMx™ Spatial Informatics Platform.

• Resource
• RRID
• 3 years ago - by Anonymous

Biotechnology research company for molecular cartography. Applys the power of Molecular Cartography to enable scientists to gain new insights based on the highest-resolution view of single-cell spatial biology.

• Resource
• RRID
• 3 years ago - by Anonymous

Xenium Analyzer offers subcellular profiling of 100s to 1,000s of RNA targets alongside multiplexed protein, in fresh, frozen or FFPE tissue.

• Resource
• RRID
• 3 years ago - by Anonymous

Integrated system with mature cyclic fluorescent in situ hybridization chemistry, resolution imaging readout, interactive data analysis and visualization software. Analysis platform to provide spatial multiomics with formalin-fixed paraffin-embedded and fresh frozen tissue samples at cellular and subcellular resolution. CosMx SMI enables rapid quantification and visualization of up to 1,000 RNA and 64 validated protein analytes. Spatial single-cell imaging platform that drives deeper insights for cell atlasing, tissue phenotyping, cell-cell interactions, cellular processes, and biomarker discovery.

• Resource
• RRID
• 3 years ago - by Anonymous

Develops and manufactures scientific instruments. Specialists for system solutions in liquid chromatography, development and optimization of front-end applications and sample preparation systems for MALDI and MALDI-MSI.

• Resource
• RRID
• 3 years ago - by Anonymous

For tissue preparation for Imaging MALDI. The sprayer can handle fresh-frozen or FFPE tissue sections. Enzymes such as trypsin can be applied to the tissue for in situ digestion. Sprayer offers the following key features: Automated delivery of matrix, enzyme or derivatization solutions; 6 port PEEK valve with low dead-volume to minimise liquid usage; Automatic self-cleaning function at end of matrix application; 100 % biocompatible; Compact unit 36 x 49 x 40 cm (w,d,h);Preprogrammed spray protocols;Up to 8 sample slides can be sprayed simultaneously;Easy to use software.

• Resource
• RRID
• 3 years ago - by Anonymous

CF-Spotter for MALDI-TOF microbial identification. Enables fast, efficient and reproducible sample preparation for MALDI-TOF microbial identification system and relieves your laboratory staff from tedious and time-consuming pipetting. Due to the non-contact application of the solutions, there is no carryover of the samples and the costs for consumables such as pipette tips are eliminated.

• Resource
• RRID
• 3 years ago - by Anonymous

SunDigest incubation device provides fully software controlled and highly reproducible digestion process under standardized conditions. Feature includes Temperatures precisely adjustable between 4 °C and 50 °C; On-Tissue digestion process under optimal humidity; Preservation of spatial resolution; High performance digestion at 50 °C; Full digestion process control.Essential for reproducible results.

• Resource
• RRID
• 3 years ago - by Anonymous

System automates all tissue section preparation steps that were previously performed manually. Deparaffinization, rehydration, antigen-retrieval and pH-adjustment steps are performed efficiently, reliably and fully automated.

• Resource
• RRID
• 3 years ago - by Anonymous

Provides flow cytometers for users from the LUMC, Leiden University and external companies.Instruments include conventional and spectral analyzers, cell sorters and mass cytometers. These instruments allow analysis and sorting up to biohazard level ML-II, while one analyzer is available for ML-III material. Provides support for all aspects of cytometry, including experimental design, instrument setup, data acquisition and data analysis.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Vortex mixer suitable for single, small containers up to 30 mm in diameter.

• Resource
• dkNET
• 3 years ago - submitted by Mahad Ahmed

The Rat Leptin ELISA is used to measure & quantify Leptin levels in Metabolism & Endocrine research.

• Resource
• dkNET
• 3 years ago - submitted by Mahad Ahmed

8-channel pipette, 100-1200 μL, uses LTS™ LiteTouch™ tips. Consistent sample pickup, all channels. Simple operation, advanced modes. Password-protection (E8-1200XLS+).

• Resource
• dkNET
• 3 years ago - submitted by Mahad Ahmed

GERONIMO is a bioinformatics pipeline designed to conduct high-throughput homology searches of structural genes using covariance models. These models are based on the alignment of sequences and the consensus of secondary structures. The pipeline is built using Snakemake, a workflow management tool that allows for the reproducible execution of analyses on various computational platforms.

• Resource
• RRID
• 3 years ago - submitted by Agata Kilar

Software pipeline to conduct high-throughput homology searches of structural genes using covariance models. Utilises covariance models to conduct homology searches of RNA sequences across wide range of gene families in broad evolutionary context.

• Resource
• RRID
• 3 years ago - submitted by Agata Kilar

Software analysis pipelines that process Chromium Single Cell Multiome ATAC + Gene Expression sequencing data to generate variety of analyses pertaining to gene expression , chromatin accessibility, and their linkage. Used to perform analyses that link chromatin accessibility and GEX.

• Resource
• RRID
• 3 years ago - by Anonymous