Curator Dashboard

Provides high quality custom non-IgG antibody services.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Shared nano/microfabrication facility located on the 1st floor of the Frederick E. Giesecke Engineering Research Building at Texas A&M University. Provides equipment for range of microscale and nanoscale fabrication of diverse materials, nanopatterning and deposition equipment. Equipment include Zeiss Orion Helium Ion Microscope/Nanofab, FEI Helios DualBeam Focused Ion Beam (FIB), ASM Atomic Layer Deposition (ALD) tool, Clustex Multi-target deposition tool, Oxford Estrelas DRIE tool, Heidelberg MLA150 Maskless Lithography tool.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Offers sorting and flow cytometry services. Equipment includes Cytek Aurora, BD ARIA III, SONY cell sorters and Cytek Aurora, 2 BD LSRFortessa X-20, BD FACSCelesta,BD LSR II, CANTO A analyzers. Individual mandatory training is necessary to access this facility. ARIA III cell sorter as well as SONY SH800 are equipped with negative pressure hood allowing sorting of potentially infectious samples including human cells from healthy donors.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web based notebook that enables data driven, interactive data analytics and collaborative documents with SQL, Scala, Python, R and more. Multi purposed web based notebook which brings data ingestion, data exploration, visualization, sharing and collaboration.

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• RRID
• 3 years ago - submitted by Robin Bramley

Software library for parsing and querying XML data with Apache Spark, for Spark SQL and DataFrames. XML data source for Spark SQL and DataFrames.

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• RRID
• 3 years ago - submitted by Robin Bramley

Software library to filter documents based on XPath expression, return specific nodes for XPath/XQuery expression, transform documents using XSLT stylesheet. By providing some basic wrappers to Saxon, spark-xml-utils library exposes some basic XPath, XQuery, and XSLT functionality that can readily be leveraged by any Spark application.

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• RRID
• 3 years ago - submitted by Robin Bramley

Collaborative unit of faculty and staff with diverse data science expertise in Biomedical Informatics Research Division in Department of Medicine. Members collaborate with investigators to address questions about disease and human health through leading in practice of data science. QSU members are data scientists with expertise including data inference, evidence synthesis, computational biology, missing data, prediction modeling, statistical computing, database creation, and software development. QSU leads and collaborates on large scale scientific projects that includes serving as data coordinating center for large multi center randomized clinical trials.

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• RRID
• 3 years ago - submitted by Ni Deng

Software R package that allows for multiple confidence intervals per row, custom fonts for each text element, custom confidence intervals, text mixed with expressions, and more. Advanced Forest Plot using 'grid' graphics. Used to extend the use of forest plots beyond meta analyses.

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• RRID
• 3 years ago - by Anonymous

The kit is a sandwich enzyme immunoassay for in vitro quantitative measurement of FGF23 in human serum, plasma, tissue homogenates, cell lysates, cell culture supernates and other biological fluids.

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• RRID
• 3 years ago - submitted by Zhong Zhong

Presentation software developed by Microsoft Corporation. Part of Microsoft Office suite. Used for creating slideshows and delivering presentations.

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• RRID
• 3 years ago - by Anonymous

Web app that allows users to search for the most important paths connecting any two nodes in Hetionet.

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• RRID
• 3 years ago - submitted by Daniel Himmelstein

Platform that facilitates data driven hypothesis generation for diabetes and related metabolic disorder research community. Curated transcriptomics datasets from various Type 2 Diabetes studies are made available for download, visualization, and enrichment analysis.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Atlas aims to provide regular information on state of diabetes. Reports, produced annually, epidemiological and diabetes related impact data including the impact of type 2 diabetes in indigenous peoples, type 1 diabetes across all age groups, COVID-19 among people with diabetes, and diabetes foot-related complications.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Portal to search liver single cell RNA-sequencing datasets. Datasets for expression of genes or proteins (when CITE-seq was performed). To search for gene enter the official gene name. To search for protein please click to see specific names to use for different markers included.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Resource enables integrative exploration of genetic and epigenetic basis of development of Type 2 Diabetes, together with other associated functional, molecular and clinical data, centered in biology and role of pancreatic beta cells.The gene expression regulatory variation landscape of human pancreatic islets.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Single cell atlas of human and mouse white adipose tissue.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Web service to predict involvement of upstream cell signaling pathways, given signature of differentially expressed genes. Used to linking expression signatures to upstream cell signaling networks.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Web server application that infers overrepresentation of upstream kinases whose putative substrates are in user inputted list of proteins. Used to analyze data from phosphoproteomics and proteomics studies to predict upstream kinases responsible for observed differential phosphorylations.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Web server application that provides access to processed data about expression of human genes and proteins across human cell types, tissues, and cell lines from several atlases. Used to explore single gene expression across tissues and cell types.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Web server application that identifies targets from user inputted RNA-seq samples collected from cells we wish to target. By comparing inputted samples with processed RNA-seq and proteomics data from several atlases, TargetRanger identifies genes that are highly expressed in target cells while lowly expressed across normal human cell types, tissues, and cell lines.

• Resource
• dkNET
• 3 years ago - submitted by Ko-Wei Lin