Curator Dashboard

Software tool as Python GUI and wrapper for control of visual stimuli designed using Psychopy libraries.

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• RRID
• 3 years ago - by Anonymous

Software Python 2D Maxima finding algorithm. Re-implementation of Java plugin for ImageJ/Fiji.

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• RRID
• 3 years ago - by Anonymous

Software Python package to read, write, create, and plot ImageJ ROI format, an undocumented and ImageJ application specific format to store regions of interest, geometric shapes, paths, text, and whatnot for image overlays.

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• RRID
• 3 years ago - by Anonymous

Database reports all data from German 'Protection against Infection Act'. Robert Koch Institute maintains database of cases of notifiable diseases, and confirmation of pathogens, reported under the German ‘Act on the Prevention and Control of Infectious Diseases in Man’. SurvStat@RKI 2.0 is application that allows retrieval of aggregated data from limited version of German notification system database. Queries can be created individually or customized from pre-defined queries to generate tables, charts, and maps.

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• RRID
• 3 years ago - by Anonymous

Software R package for developing heart rate variability analysis. Allows to import data files containing heartbeat positions in broadly used formats; eliminating outliers or spurious points present in time series with unacceptable physiological values; plotting HRV data and performing time domain, frequency domain and nonlinear HRV analysis.

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• SciCrunch
• 3 years ago - submitted by xose a. vila

Offers analytical services, technical and scientific consulting and training, as well as pay-per-use research equipment.Provides scientific expertise and support for standard and customized assays, from initial study design to final interpretation and statistical analysis of experimental data. Services also include clinical sample acquisition, processing and archival for conducting inter-disciplinary translational research applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Integrates laboratory research with clinical medicine.Creates and supports multidisciplinary programs that promote discovery and innovation in basic sciences and accelerates introduction and application of new technologies for use in basic research and clinical medicine.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core houses 5 Varian NMR Spectrometers including Inova 300, Varian 400, Neo 400, Inova 600, Inova 500.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides histological services as well as technical support. Equipped with ventilated working areas and equipment to prepare, process and stain frozen or paraffin embedded specimens. Instrumentation include VIP Tissue Processor, BIOCARE NxGen Decloaking Chamber, Rotary Microtome, Staining Center, Leica Cryostat, Zeiss Axio Microscope/Camera Software, Leica Bond-Max Immunostainer, Leica Autostainer XL, General Data Laser Cassette Marker.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to create face stimuli for experiments. Used for making 3D characters.

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• RRID
• 3 years ago - by Anonymous

Software toolkit of three dimensional models and software to study face perception. Collection of plugins used with MakeHuman to create face stimuli for experiments.

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• RRID
• 3 years ago - by Anonymous

Web application that allows users to view and explore brain cell data. Composed of three, interlinked tabs. GeneExp allows users to plot expression of one or two genes in Slide-seq atlas. SingleCell allows users to plot gene expression in snRNA-seq atlas. CellSpatial shows spatial localization of snRNA-seq cell types in Slide-seq dataset. Used to visualize, interact with, and download data.

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• dkNET
• 3 years ago - submitted by Maryann Martone

Web application as repository and launch platform for Psychopy experiments and other open-source tools.

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• RRID
• 3 years ago - by Anonymous

Software image analysis package for 3D object recognition in volumetric images developed for neuroscience research purposes. MATLAB application to recognize small structures in large volumetric image, plot their statistics and perform quantitative analysis such as nearest neighbor and colocalization analysis. Used to detect fluorescently labeled synapses in neuronal image stacks acquired using confocal or super resolution microscopes.

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• 3 years ago - submitted by Luca Della Santina

Software R package for download, setup and access of Intensive Care Unit data sets. In addition to functions for running arbitrary queries against available data sets, a system for defining clinical concepts and encoding their representations in tabular ICU data is presented.

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• SciCrunch
• 3 years ago - submitted by Nicolas Bennett

Web service that converts all 30 reconstruction formats (and 65 variations) described in scientific literature into SWC standard. Service is available open-source through user-friendly browser interface and Application Programming Interface.

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• RRID
• 3 years ago - by Anonymous

Software tool as set of scripts to prepare the input for several sequence-based RNA splicing methods from VCF files.

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• 3 years ago - submitted by Pedro Barbosa

Repository of code, data, and documentation to reproduce computational evaluation performed to identify the best tools/models to predict genetic variation in deep intronic regions of human genome.

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• 3 years ago - submitted by Pedro Barbosa

Software tool that analyses performance of several variant prediction methods at different levels. Used to benchmark variant effect predictors from VCF files.

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• 3 years ago - submitted by Pedro Barbosa

Software object oriented, lightweight and standalone Python toolbox for neural data analysis. Its core features five versatile timeseries objects from Pandas library, allowing it the versatility to be used with most raw neuroscience data types and produce some common analysis forms.

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• RRID
• 3 years ago - submitted by Jensen Palmer