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Core genomics and bioinformatics group at American Type Culture Collection.Offers whole genome sequencing and advanced bioinformatics analysis for wide range of biological materials ranging from viruses and bacteria, to fungi and human or animal cell lines, genome assembly, verified annotation, functional genomics analysis, transcriptomics analysis, cell line contamination assessments, microbiome profiling, and advanced cell line authentication services.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

The Clinical Protocol and Data Management Shared Resource (CPDM) is a component of the Center?s Clinical Trials Unit that provides central management and oversight of all clinical trials activities of the Center. The Shared Resource provides a range of management and quality control functions that are essential for conducting clinical trials research in Hawaii?s decentralized community practice setting. It includes a central location for all cancer protocols, a centralized database of protocol-specific data, an updated list of currently active protocols for the use of Center investigators, and status reports of protocols. It provides a centralized organization for activating and monitoring protocols throughout Hawaii?s multiple community offices and medical centers involving several Institutional Review Boards (IRBs). Quality control functions include: insuring subject safety and compliance with federal requirements through the Data and Safety Monitoring plan, insuring staff competency through training for research nurses, CRAs, clinical trials assistants and community office, clinic, and hospital staff engaged in Hawaii?s cancer clinical trials enterprise, and insuring recruitment of underserved minorities through focused outreach activities.

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• SciCrunch
• 13 years ago - by Anonymous

A Wiki devoted to topics in clinical informatics. Contents: 1 Health Information Technology Regional Extension Centers 2 Free and Open Source Software (FOSS) licensing in medicine 3 Electronic Healthcare Communication 4 Electronic Medical Record (EMR) Systems 5 Computer-based Provider Order Entry -- CPOE 6 Clinical Decision Support -- CDS 7 Books on Topics in Clinical Informatics 8 Medical Devices, Computerized -- SmartDevices 9 Personal Health Records -- PHRs 10 Personal Health Applications -- PHAs 11 Informatics Students'' Contributions 12 Blueprint for a Comprehensive HIT System 13 Biobanking -- a.k.a. Biorepositories or Tissue Banks 14 Organizational issues 15 Regional Health Information Organizations -- RHIOs 16 Evidence-Based Medicine -- EBM 17 Evaluation Methods in Informatics 18 Unintended Consequences of Health Information Technology 19 Quality & Quality Informatics 20 Public Health Informatics 21 U.S. Federal Health Information Technology Initiatives 22 The E-Patient-Provider Relationship 23 Interface Terminology 24 New CIS-related Technologies 25 Workflow 26 Terminology and Coding 27 Interface/Usability Testing 28 International views 29 Blogposium, April 2006 30 Departments / Schools of Biomedical or Medical Informatics 31 Endowed Professorships and Chairs in Health / Medical / Nursing / Biomedical Informatics 32 Leading Health Informatics and Medical Informatics Journals o 32.1 Ranking of ISI/SCI listed e-Health and Medical Informatics Journals o 32.2 Not listed / ranked in ISI/SCI 33 External Links 34 External Medical Reference Links 35 External Informatics Organizations Links

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• SciCrunch
• 17 years ago - by Anonymous

Software R package for Nuclear Mitochondrial integration events NUMT detection using structural variant calls.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core provides proteomics services including Protein identifications, PTM analysis, quantitative proteomics (label-based and label-free).

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

Ontology that is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of).

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• SciCrunch
• 13 years ago - by Anonymous

Core supports research progress and grant development by encouraging researchers to explore advanced imaging modalities and to incorporate them into their existing research programs.Provides technical expertise and cutting edge microscope systems to support research of faculty and staff of Texas A&M University Health Science Center, Texas A&M University, and all other campuses.IMIL includes six microscopy rooms, supporting facilities, and image processing station.Technical staff is available to train and assist with design, implementation, and analysis of experiments as well as assist in troubleshooting.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

The Mitochondrial Function and In Vivo Imaging (MF-II) Core provides specialized expertise, advanced instrumentation, and comprehensive services for assessing mitochondrial function, metabolism, cardiopulmonary physiology, and in vivo structure and function. The Core supports cardiovascular, pulmonary, and vascular research through high-resolution metabolic and mitochondrial analyses, noninvasive imaging, hemodynamic assessment, and established preclinical disease models. The MF-II Core works collaboratively with investigators to provide experimental design consultation, technical expertise, data acquisition, and analysis to generate high-quality, reproducible data.

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• RRID
• 2 months ago - submitted by Peng Zhang

Free open-source software for exploring and analyzing large, high-dimensional image-derived data. It includes machine learning tools for identifying complex and subtle phenotypes. Source code and accompanying files are available. It is designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.

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• SciCrunch
• 16 years ago - by Anonymous

Software R package to calculate probability of freedom from disease in population based on surveillance data.

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• RRID-Legacy
• 5 years ago - by Anonymous

Core supports basic, clinical, population- and community-based, and translational cancer research by providing cost-effective, full-service biostatistical support for researchers with interests spanning the full range of research activities in the UNMCCC.

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• RRID
• 2 months ago - by Anonymous

Not yet vetted by NIF curator

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• SciCrunch
• 16 years ago - by Anonymous

Full service sequencing core that provides both Sanger and Next Generation Sequencing services, in addition to library prep and quality check services, open access to equipment and training. Works directly with the bioinformatics core who can provide assist in any of your analysis needs to data storage solutions.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Facility is aimed towards developing new research tools for life sciences. In the facility, CMOS processing technologies are utilized to enable personalized healthcare and preemptive medicine via smart and miniature devices, circuits, and systems with biomedical applications. Biosensing, DNA sequencing, and smart implanting are key components of the COREs tasks. Discovery-based research and translational research is supported in this lab as the Device Fabrication facility wishes to promote the development of new research tools for life science applications.

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• SciCrunch
• 2 months ago - submitted by Edyta Vieth

It is based a SVM-based classifier.

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• SciCrunch
• 13 years ago - by Anonymous

Core laboratory with infrastructure and expertise to perform all aspects of protein and small molecule structure determination using X-ray crystallography. For protein structure determination, high-throughput methods are utilized to move projects rapidly from gene-to-structure.

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• SciCrunch
• 5 years ago - submitted by Edyta Vieth

Core supports data-enabled research through training, advising, and collaboration in data science, covering topics like research design, data access, analysis, visualization, reproducibility, ethics, and use of tools and methods in the areas of machine learning, bioinformatics, HPC, and open-source software.

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• RRID
• 2 months ago - by Anonymous

Data analysis service providing a motif discovery platform developed to help biologists to find novel as well as known motifs in their peak datasets from transcription factor (TF) binding experiments such as ChIP-seq and ChIP-chip.

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• SciCrunch
• 13 years ago - by Anonymous

Knowledgebase of biomedical research resources. Repository for storing validation and problematic information about variety of entities within biomedical domain, such as antibodies, cell lines, etc. Enables researchers to submit their own claims about specific entity to make validation/problematic information F.A.I.R. (Findable, Accessable, Interoperable, Reuseable).

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• RRID-Legacy
• 5 years ago - submitted by Edyta Vieth

Core provides NMR services and instrumentation including 500MHz NMR spectrometers and X-band EPR spectrometer.

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• RRID
• 1 month ago - submitted by Monika Ivancic