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Software image processing and analysis library that puts its main emphasis on customizable algorithms and data structures. VIGRA is especially strong for multi-dimensional images. By using template techniques similar to those in the C++ Standard Template Library, you can easily adapt any VIGRA component to the needs of your application, without thereby giving up execution speed. As of version 1.7.1, VIGRA also provides extensive Python bindings on the basis of the popular numpy framework.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to clean sequence data from automated DNA sequencers prior to sequence assembly and other downstream uses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software graphical desktop tool for semi-automatic postprocessing of de novopredicted LTR retrotransposon annotations, such as the ones generated by LTRharvestand LTRdigest. Interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion allowing the user to "sift" through results of de novo prediction software. It also offers customizable filtering and classification functionality.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source commandline based application and/or software development library, that performs 2D, rigid image registration on two greyscale images and outputs either the transformation parameters or the registered image.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software cross-platform C++ library for loading multimodal, multi-rate signals stored in XDF files. Used in biosignal viewing application SigViewer and the LSL application XDFStreamer. Can also be integrated into other C++ applications.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as kmer-based error correction method for whole genome sequencing data. Lighter uses sampling rather than counting to obtain set of kmers that are likely from the genome. Using this information, Lighter can correct the reads containing sequence errors.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ thread pool library.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library as set of classes for creating statistical genetic programs.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Functions available from this module select the top n elements from a list using several common orderings and custom key extraction procedures.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++ htslib/bwa-mem/fermi interface for interrogating sequence data

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library used by other RDP tools.TaxonomyTree building and traversal utility classes.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

SIMD Smith-Waterman C/C++ library for use in genomic applications. SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C++11 library for next-gen sequence quality control and assessment.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library that exports C++ mmCIF accessors to Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software core library and API of the Medical Image NetCDF toolkit.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software reference library for Image Cytometry Standard, an open standard for writing images of any dimensionality and data type to file, together with associated information regarding the recording equipment or recorded subject.Image Cytometry Standard file reading and writing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software repository contains java code for NeXML processing.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software C library with bioinformatic focus optimised for speed and clean API.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package provides low-level interface to the primer3 and epcr binary executables and supplies methods to return the results. Because primer3 and e-PCR are only available for Unix-like operating systems, Bio-PrimerDesigner offers the ability to accessing the primer3 binary via a remote server. Local installations of primer3 or e-PCR on Unix hosts are also supported.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software toolkit for gray scale medical image analysis. Provides combination of command line tools, plug-ins, and libraries that make it possible to run image processing tasks interactively in command shell and prototype algorithms as shell scripts. MIA is build around a plug-in structure that makes it easy to add functionality without compromising the original code base, and it makes use of wide variety of external libraries that provide additional functionality.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth