Curator Dashboard

Software tool set for molecular Quantitative Trait Loci discovery and analysis. Allows to go from raw sequence data to collection of molecular Quantitative Trait Loci in few easy-to-perform steps.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software, written in C and compiled as Python module, for rapidly scanning microarray expression data for Quantitative Trait Locies. Searches for association between each expression trait and all genotypes and evaluates that association by permutation test. Performs bootstrap resampling to estimate confidence region for location of putative QTL.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python library for phylogenetic computing. Provides classes and functions for simulation, processing, and manipulation of phylogenetic trees and character matrices, and supports the reading and writing of phylogenetic data in range of formats, such as NEXUS, NEWICK, NeXML, Phylip, FASTA., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software toolbox to fit psychometric functions and to test hypotheses about psychometric data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for sparse, compressed, binary persistent storage format used to store genomic interaction data, such as Hi-C contact matrices.Scalable storage for Hi-C data and other genomically labeled arrays.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software provides command line interface and Python API for working with Biological Observation Matrix files.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python library for analysis of genomic sequence data. Framework for novel probabilistic analyses of biological sequences, devising workflows, and generating publication quality graphics.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application for efficient comparison of genomic intervals in Python.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application for perpendicular line scanning fluorescence correlation spectroscopy.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for aligning sequences to template alignment.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source Python-based optimization modeling language with diverse set of optimization capabilities.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software airr reference library provides basic functions and classes for interacting with AIRR Community Data Representation Standards, including tools for read, write and validation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source Python software package designed to perform azimuthal integration and, correspondingly, two-dimensional regrouping on area-detector frames for small- and wide-angle X-ray scattering experiments.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software application to compute metrics and generate interactive QC plots for Oxford Nanopore technologies sequencing data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool implementing novel indexing data structure for compacted de Bruijn graph and colored compacted de Bruijn graph.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for selecting target specific peptide candidates directly from given proteome sequence data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for coding psychology experiments in Python.Supports presentation of both visual and auditory stimuli, and supports both manual and sound input as responses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools for creating the sequence-to-structure alignment database PSSH2.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth