Curator Dashboard

Service core arm of Center for Neurocognition and Behavior. Used for measuring healthy human brain and behavior in action. Facility houses equipment, including MRI, SQUID and triaxial OPM MEG, EEG, NIRS, TMS, VR, eye-tracking, and body motion tracking.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides scientists with cryo-electron microscopy utilization, skills and knowledge to aid in their research.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Resource designed to publish information and data about California coast reflecting current scientific understanding and data for the purpose of informing public policy and advancing the understanding of coastal processes.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Platform provides resources for genomic observations from collection to analysis and publication. Works with standards community to ensure clear vocabularies and useful ontologies for biological resources and related assets. Biocode Commons is also collaborating on development of Biological Collections Ontology, working to better integrate ontologies, vocabularies, and relevant standards that are related to BCO.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Acts as part of statewide earthquake monitoring system, the California Integrated Seismic Network. Conducts essential research on earthquakes and solid earth processes while collecting and delivering high quality geophysical data. Data from these geophysical networks are recorded digitally and are archived at the Northern California Earthquake Data Center, which is located at the Berkeley Seismological Lab.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Simple, lightweight, and low cost customizable multielectrode array for Local Field Potential recordings. Used to collect LFP data from different brain regions simultaneously in rats. Can be modified to record single unit and multiunit activity in addition to LFP activity using both wired and wireless neural data acquisition systems.

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• RRID
• 3 years ago - submitted by Jensen Palmer

Data platform for academic research. Redivis provides organizations with central hub where researchers can easily discover, access, and analyze their data.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Platform for data on open source software (OSS) used in science and technology research. Drawing on Github Archive, ETO’s Merged Academic Corpus, and many other data sources, ORCA tracks OSS usage, health, development activity, and community engagement across software projects and research subjects. Use ORCA to compare OSS projects in particular research area, track trends over time, and sort and filter projects by different metrics.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Software bulk RNA-seq cellular deconvolution tool. Used for analysis of healthy tissue and tumor biopsies. Based on RNA-seq NGS data of biological sample, Kassandra predicts cellular composition including stromal and immune elements by analyzing gene expression.

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• RRID
• 3 years ago - by Anonymous

Platform as clinical knowledge base to search information to answer genomic questions. Connects clinicians, genetic counselors, and healthcare organizations by sharing genetic insights, enabling platform users to make impactful discoveries providing better patient care.

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• RRID
• 3 years ago - by Anonymous

Software tool for evaluating batch effects in data integration. Tool to improve accuracy and reliability of experimental results. Used to evaluate batch effect of dataset integration and output comprehensive report.

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• RRID
• 3 years ago - by Anonymous

Galaxy based disease specific web portal for drug discovery research of COVID-19. Open access disease specific drug discovery portal.

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• RRID
• 3 years ago - submitted by G Narahari Sastry

Imaging core and shared resource facility. Provides electron microscopy services, education, and training. Equipped with high resolution transmission electron microscopes, scanning electron microscopes, high pressure freezer and ancillary sample preparation equipment. The equipment can provide nanometer scale analysis for biological, chemical and materials science. Offers Project consultation, Education and training for new users, Equipment for trained users who anticipate having long term EM projects, Full service microscopy.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

AI based software for detecting integrity issues in figures of scientific articles. Used for detecting integrity issues in life science articles. Detects inappropriate manipulation and duplication in many figure types, including blots, microscopy images, and light photography.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Web Luna based interactive viewer for EDF signal and annotations, specifically designed for polysomnographic data. Supports visualization, analyses and manipulation of sleep signals, range of summary statistics and hypnogram based analyses including automated staging.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Software package for analysis of sleep signal data. Open source C/C++ software for manipulating and analyzing polysomnographic recordings, with focus on sleep EEG.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Web based platform that facilitates knowledge resolution by enabling users to traverse growing network of input datasets, semantically annotated API endpoints, and data visualization tools contributed by the ecosystem. Via user friendly web based user interface, workflows can be constructed from these building blocks without technical expertise.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

FAIR API ecosystem for inter-connected biomedical knowledge. Provides three components in its API development ecosystem: family of high-performance APIs for accessing up-to-date annotations for genes, genetic variants, chemicals and drugs; provides BioThings API packages its API-development best practice into reusable Software Development Kit to help other bioinformaticians to build same high-quality API to distribute their own specific knowledge; BioThings API provides platform to foster findability and interoperability across community developed biomedical APIs. Provides tools for authoring API metadata following community supported OpenAPI standard and hosts standardized interactive API documentation. Defines set of OpenAPI extensions to provide biomedical specific semantic annotations.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Software statistical framework for mapping risk genes from de novo mutations in whole genome sequencing studies.

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• RRID
• 3 years ago - submitted by Quetzally Medina

Analyzer used for high throughput full range single cell analysis. Chromium X runs high-throughput assays. It runs all single cell assays, including high-throughput assays for Single Cell Immune Profiling and Single Cell Gene Expression.

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• RRID
• 3 years ago - by Anonymous