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Raster3D
Software tools for generating high quality raster images of proteins or other molecules. Photorealistic molecular graphics. The core program renders spheres, triangles, cylinders, and quadric surfaces with specular highlighting, Phong shading, and shadowing.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
No bidirectional relationship between sleep phenotypes and risk of diabetic retinopathy: A two-sample Mendelian randomization studyNo bidirectional relationship between sleep phenotypes and risk of diabetic retinopathy: A two-sample Mendelian randomization study
Supplemental Data
- Resource
- RRID
- 3 years ago - submitted by Jing Wei
Multiome Pipeline
Software pipeline developed in collaboration with BRAIN Initiative Cell Census Network, BRAIN Initiative Cell Atlas Network, and SCORCH. Supports processing of 10x 3' single-cell and single-nucleus gene expression (GEX) and chromatin accessibility (ATAC) data generated with the 10x Genomics Multiome assay.
- Resource
- RRID
- 3 years ago - submitted by Kaylee Mathews
Multiome Pipeline
Software open-source, cloud-optimized pipeline developed in collaboration with members of the BRAIN Initiative (BICCN and BICAN Sequencing Working Group) and SCORCH. It supports the processing of 10x 3' single-cell and single-nucleus gene expression (GEX) and chromatin accessibility (ATAC) data generated with the 10x Genomics Multiome assay.
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- RRID
- 3 years ago - submitted by Kaylee Mathews
ensemblQueryR
Software R package allowing integration of Ensembl querying with R workflow. Used to seemlessly integrate querying of Ensembl databases into your R workflow.
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- RRID
- 3 years ago - by Anonymous
Rocker
Software suite of Docker images with customized R environments for particular tasks. Docker containers for R to create, distribute, deploy, and run software applications using containers.
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- RRID
- 3 years ago - by Anonymous
GenomeMUSter
Web and programmatically accessible data service comprising allelic data covering strains at segregating sites. Mouse genetic variation service enables multi-trait, multi-population data integration and analyses. Interoperation with phenotype databases, analytic tools and other resources enable wealth of applications including multi-trait, multi-population meta-analysis. Mouse genetic resource that includes typed, sequenced, and imputed allelic states of 657 inbred mouse strains and their derivatives at 106.8M sites.
- Resource
- RRID
- 3 years ago - by Anonymous
Ambulatory Monitoring: Psychomotor Vigilance Task system
System includes PVT-192 monitor and REACT software. Used for reaction time testing for long-term, large-scale testing of vigilance, effects of sleep deprivation, and drug effects. Used for PVT test wherever measures of performance or sleepiness effects are needed.
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- RRID
- 3 years ago - by Anonymous
Karolinska Sleepiness Scale
The scale measures subjective level of sleepiness at particular time during the day. On this scale subjects indicate which level best reflects the psycho-physical sate experienced in the last 10 min.KSS is measure of situational sleepiness.
- Resource
- RRID
- 3 years ago - by Anonymous
Epworth Sleepiness Scale
New method for measuring daytime sleepiness. Self administered questionnaire to provide measurement of subject's general level of daytime sleepiness. Subjects are to rate the chances that they would doze off or fall asleep when in eight different situations commonly encountered in daily life.Used to give valid measurements of sleep propensity in adults.
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- RRID
- 3 years ago - by Anonymous
MorePower
Software tool as flexible freeware statistical calculator that computes sample size, effect size, and power statistics for factorial ANOVA designs.
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- RRID
- 3 years ago - by Anonymous
Moodle LMS
Open source learning platform to provide educators, administrators and learners with integrated system to create personalised learning environments. Designed to help educators create online courses based on pedagogical principles.
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- RRID
- 3 years ago - submitted by Manuel Oellers
rasmol
Software package for molecular graphics visualisation.Used for visualisation of molecules.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
rampler
Standalone software for sampling genomic sequences.Supports two modes, random subsampling of sequencing data to desired depth and file splitting to desired size in bytes.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
ragout
Software tool for chromosome level scaffolding using multiple references. Given initial assembly fragments and one or multiple related references it produces chromosome scale assembly.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
quicktree
Software application as implementation of Neighbor-Joining algorithm, capable of reconstructing phylogenies from huge alignments.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
rapmap
Software tool for mapping RNA-seq reads to transcriptomes. Used for rapid sensitive and accurate read mapping via quasi-mapping
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
qcumber
Software for quality control, quality trimming, adapter removal and sequence content check of NGS data.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
python-bx
Software Python library and associated set of scripts for rapid implementation of genome scale analyses.
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- SciCrunch
- 3 years ago - submitted by Edyta Vieth
raccoon
Software graphical interface for preparing AutoDock virtual screenings.Automates some of the most common operations performed when preparing virtual screening.
- Resource
- SciCrunch
- 3 years ago - submitted by Edyta Vieth
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