Curator Dashboard

Custom Brain Heatmaps on top of the Allen Brain Atlas. Platform to generate brain heatmaps for the human or mouse brain ontop of the Allen Brain Atlas by editing google spreadsheet template with specific brain region and gene information.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package that tests for expression enrichment in specific brain regions at different developmental stages using expression information gathered from multiple regions of the adult and developing human brain, together with ontologically organized structural information about the brain, both provided by the Allen Brain Atlas.Used to test for gene set expression enrichment in adult and developing human brain.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Allen Brain Atlas. Software toolkit to collect and preprocess expression data from Allen Brain Atlas and allow query to visualize spatial distribution of genes of interest, characterize spatial heterogeneity of brain, and register cells from single-cell transcriptomics data to fine anatomical brain regions via machine learning methods with high accuracy.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web based gene expression energy visualization tool.Created for visualizing expression energy data from the Allen Brain Atlas.ABADV generates simple-to-analyze visualizations of numerous mouse gene expression data across brain structures.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to simplify process of producing graphics for expression data available in the Allen Institute's Brain Atlases. Related to Allen Mouse Brain Atlas.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software pipeline aiming at detecting transcripts enriched in hippocampal neuropil of adult mice, by systematically exploring high resolution images contained in Mouse Brain Atlas. Data mining tool that can provide information to select target genes whose nature will be studies and confirmed using biological tests.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Public research university with its main campus in Boca Raton, Florida and satellite campuses in Dania Beach, Davie, Fort Lauderdale, Jupiter, and Fort Pierce. The university is a member of the State University System of Florida.

• Resource
• RRID
• 3 years ago - submitted by Edyta Vieth

Provides instruments for performing widefield light microscopy, multiphoton microscopy, and confocal microscopy. Offers software for analyzing imaging data.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides access to equipment to work on research projects, including cancer treatment research, vaccine development, and prosthetic creation. Instruments including micro-computed tomography (CT) scanner; scanning electron microscope (SEM); histology equipment; inverted fluorescence compound microscope; and stereoscope is available to FAU students (high school, undergraduate, graduate), post doctoral researchers, and faculty.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Microscope enables super solution imaging of live cells at ten times the speed of conventional SIM. Powered by ECLIPSE Ti2-E Inverted Research Microscope, taking advantage of its advanced optics, stability and features.

• Resource
• RRID
• 3 years ago - by Anonymous

Arduino code, 3D print design files, and tutorial video on how to build LIQ HD system. Open source tool for recording undisturbed two-bottle drinking behavior in home cage environment. All designs and software are open source to allow other researchers to build on the system and adapt LIQ HD to their animal home cages.

• Resource
• RRID
• 3 years ago - submitted by Jensen Palmer

Web tool for functional analysis of sets of miRNAs. Tailored for miRNA precursors and mature miRNAs of multiple frequently investigated species. Used for miRNA set enrichment analysis. miEAA 2.0 is updated version for integrating multi-species microRNA enrichment analysis and workflow management systems.

• Resource
• RRID
• 3 years ago - by Anonymous

Web server for miRNA set enrichment analysis. TAM 2.0 is updated version of this web server. Allows to test functional and disease annotations of miRNAs by overrepresentation analysis and to compare input de-regulated miRNAs with those de-regulated in other disease conditions via correlation analysis.

• Resource
• RRID
• 3 years ago - by Anonymous

Absorbance reader offers reading speeds of 6 sec at single wavelength detection, onboard software capabilities including protocols for kinetic assays, preprogrammed validation protocol, built-in plate shaker, and built-in thermal printer. Instrument can read flat-, U-, or V-bottom microplates or 8- or 12-well strip plates. Includes 415, 450, 490, 595, 655, and 750 nm filters, onboard software, USB and power cables.

• Resource
• RRID
• 3 years ago - by Anonymous

CO2 Incubator for cell and tissue cultures grow. Offers precise temperature and CO2 control, humidification system to reduce recovery time and internal solid copper construction for durable contamination control.

• Resource
• RRID
• 3 years ago - by Anonymous

Designed specifically for clinical laboratory NAVIOS EX 10-color flow cytometer delivers performance with improved sample traceability and reporting functions. Navios EX has two optional ready-to-use IVD reagent systems, the Navios Tetra System for simultaneous identification and enumeration of T, B and NK lymphocytes and the ClearLLab 10C System – the first FDA cleared and CE marked integrated leukemia and lymphoma immunophenotyping system.

• Resource
• RRID
• 3 years ago - by Anonymous

Software tool for effectively prioritizing altered genes on cancer type level by considering mutation pair genes. Used to prioritize cancer genes on cancer-type level by utilizing somatic mutation data, protein‒protein interaction networks, and differential expression data.

• Resource
• RRID
• 3 years ago - submitted by Yangyang Liu

Software application for isothermal titration calorimetry performed on MicroCal PEAQ instrument by Malvern.

• Resource
• RRID
• 3 years ago - by Anonymous

Advanced widefield microscope enabling use of 3D specimens with camera based fluorescence microscopes. System ensures low phototoxicity and photobleaching, i.e., higher throughput with optimal conditions.

• Resource
• RRID
• 3 years ago - by Anonymous

University of Lethbridge with campuses in Lethbridge and Calgary, is one of Canada"s leading research institutions.

• Resource
• RRID
• 3 years ago - submitted by Edyta Vieth