Curator Dashboard

Software open-source, cloud-optimized pipeline developed in collaboration with members of the BRAIN Initiative (BICCN and BICAN Sequencing Working Group) and SCORCH. It supports the processing of 10x single-nucleus data generated with 10x Multiome ATAC-seq (Assay for Transposase-Accessible Chromatin), a technique used in molecular biology to assess genome-wide chromatin accessibility.

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• RRID
• 3 years ago - submitted by Kaylee Mathews

CCAM Microscopy Facility provides access to equipment for quantitative fluorescence imaging applications. Instruments include laser scanning confocal microscopes equipped with 34 channel highefficiency QUASAR detectors. One of these microscopes supports nonlinear optical excitation, fluorescence correlation spectroscopy, and fluorescence lifetime imaging microscopy. Additionally, there is a light sheet microscope available for micro/mesoscale 3D imaging. The Zeiss Elyra 7 microscope is capable of total internal reflection fluorescence microscopy and supports several super resolution techniques such as lattice structured illumination microscopy, stochastic optical reconstruction microscopy, 3D photoactivated localization microscopy, and DNA points accumulation for imaging in nanoscale topography.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python tool for viewing and downloading files from authorized European Genome-phenome Archive datasets. Python based EGA download client.

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• 3 years ago - by Anonymous

Core to help users turn images into answers by offering assistance and training with open source image analysis tools, creating custom image analysis workflows, and creating custom software for image analysis when needed.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core provides instruments including micro-computed tomography scanner, non-contact 3D optical profiler , and high powered workstations.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Collections include print and ebooks, newspapers, maps, photographs, art, historical archives, and other materials in physical and digital formats. Provides campuswide subscriptions to wide range of licensed resources, from journals and library databases to streaming media, clinical apps, and lab experiment videos. Offers access to UC collection as part of University of California.

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• 3 years ago - submitted by Edyta Vieth

Consortium of UC San Diego organizations and number of partnerships including university collaborators, industry partners, fire departments, utilities, State’s CalOES and CPUC. Develops science driven technologies with fire management community using collaborative workflows integrating science and AI. Provides real time fire modeling and predictions for firefighters. Harnesses emerging AI techniques to offer novel way to approach spatial heterogeneity and upgrading of data.

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• 3 years ago - submitted by Edyta Vieth

Network for monitoring waves and beaches and prediction of waves and shoreline change along coastlines of United States. Since 1975 program has produced database of publicly accessible environmental data for use by coastal engineers and planners, scientists, mariners, and marine enthusiasts. Forefront of coastal monitoring, developing numerous innovations in instrumentation, system control and management, computer hardware and software, field equipment, and installation techniques. Operated by Ocean Engineering Research Group, part of Integrative Oceanography Division at Scripps Institution of Oceanography. CDIP measures, analyzes, archives and disseminates coastal environment data for use by coastal engineers, planners and managers, as well as scientists and mariners.

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• 3 years ago - submitted by Edyta Vieth

Library shares with other academic libraries commitment to intellectual freedom and access to information. This commitment is reflected in open stacks, active interlibrary loan service, online catalog, and Web site linked efficiently to other sites and databases. Has partnerships with libraries at other University of California campuses, local California State Universities, community colleges, and public libraries. Has active participation in California Digital Library.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Publishing house associated with University of California that engages in academic publishing. UC Press Foundation raises funds to uphold vital role as independent, nonprofit publisher, and receives philanthropic support.

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• 3 years ago - submitted by Edyta Vieth

Library of ecosystems throughout California. Most of the state’s major habitat types are represented, from coastal tidepools to inland deserts, and lush wetlands to redwood forests.

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• 3 years ago - submitted by Edyta Vieth

Faculty directors from UC Berkeley, UC Davis, UC Irvine, and UCSF support collaborative student research projects, publications, and resources with the aim to have substantial record of achievement and innovation pursued through allocated research funding to support humanism in medicine and health science education.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Portal provides information about social science data.

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• 3 years ago - submitted by Edyta Vieth

Provides scholarly publishing and repository services that enable departments, research units, publishing programs, and individual scholars associated with University of California to have direct control over creation and dissemination of the full range of their scholarship.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Provides research data and computing technologies, consulting, and community for the UC Berkeley campus to advance research through IT innovation.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Research institute dedicated to developing and deploying knowledge and tools for project management. Projects are temporary production systems. Dedicated to developing and deploying knowledge and tools for management of project production systems and the management of organizations that produce and deliver goods and services through such systems.

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• 3 years ago - submitted by Edyta Vieth

Provides advanced computing resources and services to support needs of UC San Diego research community. In addition, researchers from other academic institutions and industries can also participate in this research computing program. TSCC operates on two different computing models – Condo (a system purchase model) and Hotel (a pay-as-you-go model) to support broad range of research computing workloads including traditional HPC, HTC, and emerging big data pipelines.

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• 3 years ago - submitted by Edyta Vieth

Network of world class researchers and innovators to improve lives of people living in poverty by generating insights and tools for decision makers backed by rigorous, inclusive, and transparent research. Hub for research, training and innovation headquartered at University of California, Berkeley.

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• 3 years ago - submitted by Edyta Vieth

Center aimes at promoting greater cooperation in engineering and maintenance of global Internet infrastructure, better manage ever increasing volume of digitally based information including security and network data analysis. Provides open access data and tools.

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• 3 years ago - submitted by Edyta Vieth

Academic consortium that conducts research to advance understanding of the coastal ocean within the California Current Large Marine Ecosystem and inform management and policy.

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• RRID
• 3 years ago - submitted by Edyta Vieth