Curator Dashboard

Software tool as local sequence aligner intended for use with large biological DNA sequences, with more than 1 Millions of base pairs.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package written and supported by ArrayExpress curation team, which aims to ease the process of submitting large microarray experiment datasets to our public repository database.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as clustering method for amplicon-based studies.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for likelihood based detection of selective sweeps in thousands of genomes. Software parallel and checkpointable tool that implements composite likelihood ratio test for detecting selective sweeps.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software object oriented Perl library to handle Swiss-Prot entries

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Machine learning based software to score and rank contigs from de novo assemblies of next generation sequencing data. It trains with alignments of contigs with known reference genomes and predicts scores and ranking for contigs which have no related reference genome yet.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to turn data scripts into shareable web apps in minutes. Faster way to build and share data apps.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to correct sequencing errors in single pass reads for de novo assembly.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool aims to cluster sequences in a way that is fast and exact at the same time.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as Intuitive Editor for annotated multiple Sequence and Structure Alignments.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software collection of tools and libraries for using data in the INSDC Sequence Read Archives.Used for long term storage of the next-generation sequence traces.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software workflow aimed at analyzing single-end Illumina RNA-seq data. The software is supported on Windows, Mac OS X, and Linux platforms.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Short read mapping software. Read mapping tool offering variety of analytical output functions, with emphasis on genotyping,

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library for MinHash sketching of DNAsearch. Used to compare and analyze genomic and metagenomic data sets.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source software framework targeting at real-time simulation, with emphasis on medical simulation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software for alignment free sequence comparison. Uses pattern of care and don't care positions. Compares frequencies of spaced words according to pre-defined pattern.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software framework to provide ludic-therapeutic activities for people with disabilities.Offers new forms of interaction based on computer vision, voice and other peripherals to produce result in form of image and sound. Used for continuous and remote interaction, attainable to majority of people with cognitive, sensory and physical disabilities.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software workflow for SEQuential alignment of SEQuences to build PAN-genome data structure and whole-genome-alignment.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

SISTR command-line tool. Open web accessible tool for rapidly typing and subtyping draft salmonella genome assemblies.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software de-novo sequence read assembler for microbial genomes.Designed to create breaks at repeat regions in the genome. This leads to excellent sequence quality without significantly compromising contiguity.SKESA contigs could be connected into GFA graph using GFA connector.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth