Curator Dashboard

Software Python cross platform framework for creating, managing, and sharing workflows. Workflow consists of number of connected workflow steps. Framework is plugin-based application where the plugins are workflow steps. Can be used for visualising and mapping anatomical structures.

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• 3 years ago - submitted by Hugh Sorby

Comprehensive DNA methylation database. Provides genome wide mapping of methylation sites to target genes through integrating a large number of DNA methylation and gene expression profiles in human diseases, and to annotate methylation sites to abundant regulatory elements and TFs.

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• 3 years ago - by Anonymous

Software for comprehensive PCR Primer design. Search algorithm finds optimal PCR, multiplex and SNP genotyping primers with the most accurate melting temperature.Primers are screened for secondary structures, dimers, hairpins, homologies and physical properties before reporting the best ones for your sequence, in ranked order. Load the gene of interest from NCBI, select search range, and let Primer Premier pick the best possible primers for you.

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• 3 years ago - by Anonymous

Software toolkit for analyzing linked-read sequencing data. Used to process human and metagenomic linked read sequencing data from different linked read sequencing technologies, including 10x Genomics, single tube long fragment read and transposase enzyme linked long read sequencing. LRTK provides functions to perform read cloud assembly, barcode aware read alignment, reconstruction of long DNA fragments, taxonomic classification and quantification, and genomic variant calling and phasing. LRTK also has the ability to perform automatic analysis from raw sequencing data to downstream analysis and support analysis of multiple samples in parallel. Can produce publication ready visualizations and generates reproducible reports, summarizing key parameters at multiple checkpoints such as library preparation.

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• 3 years ago - by Anonymous

Portal provides HPV-associated cancer statistics. Population based data from cancer tissue to estimate percentage of these cancers that are caused by HPV. Portal provides number of HPV-Attributable Cancer Cases per Year.

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• 3 years ago - by Anonymous

Regularly collects nationally representative data about American public’s knowledge of, attitudes toward, and use of cancer and health related information. HINTS data are used to monitor changes in fields of health communication and health information technology and to create more effective health communication strategies across different populations. Weighted, nationally representative probability based survey of civilian, non-institutionalized adults administered by National Cancer Institute on knowledge of and attitudes toward cancer relevant information.

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• 3 years ago - by Anonymous

Bibliographic database for sports and sports medicine research. Includes records from leading sports medicine journals. Includes rigorous curation and indexing of open access journals. Once validated and certified for inclusion, these journals are treated with subject indexing and full text linking.

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• 3 years ago - by Anonymous

Open source modular apparatus to produce guide cannulas exploiting 3D printing technology. Step by step procedure to realize hippocampal guide cannulas. 3D-printed guide cannula implant, as well as rotary tool based cutting station for fabrication of cannulae. Useful to conduct research in all the fields where access to brain areas is needed.

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• 3 years ago - submitted by Kevin Chavez Lopez

Software set of tools used in production and exploration of bacterial artificial chromosome restriction maps.

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• 3 years ago - submitted by Eamon Winden

Cyclic IMS pairs unique cyclic ion mobility separation which enables separation based on shape, with time-of-flight separation based on mass to charge ratio (m/z). It is equipped with DESI and electrospray sources for surface and solution analyses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Multi Reflecting Time-of-Flight features routine ppb mass accuracy and ultra-high resolution by extending the flight path via gridless electrostatic mirrors in mass analyzer. It is equipped with DESI and MALDI sources for imaging mass spectrometry.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Agilent 6495C triple quadrupole LC/MS system increases capacity and sensitivity for targeted quantitation applications. Used to investigate more diverse and biologically relevant groups of targeted peptides, small molecules and metabolites in single experiment without compromising sensitivity, quantitative accuracy, or linearity.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source raw data file toolkit for mass spectrometry data analysis, provided by the BioNovoGene corporation. The features of mzkit inlcudes: raw data file content viewer(XIC/TIC/Mass spectrum plot/MS-Imaging), build molecule network, formula de-novo search, de-novo annotation of the unknown metabolite features, MALDI single cell metabolomics data analysis, pathological slide viewer and targeted data quantification.

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• 3 years ago - by Anonymous

Software tool accurately classifies personal names by gender, country of origin or ethnicity. Can infer gender, translate Chinese names and Japanese names, format phone number, and split full name via user interface and API. Used as name checker for gender, origin and ethnicity determination.

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• 3 years ago - submitted by Anita Bandrowski

Open source video annotation software that is suitable for research, teaching, or learning.

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• 3 years ago - by Anonymous

Drug discovery platform to integrate visualization, modeling and simulation in single package. Integrated computer aided molecular design platform.

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• 3 years ago - by Anonymous

Cancer research platform that aggregates clinical, genomic and functional data from various types of patient derived cancer models, xenographs, organoids and cell lines. Open catalog of harmonised patient-derived cancer models. Standardises, harmonises and integrates clinical metadata, molecular and treatment-based data from academic and commercial providers worldwide. Data is FAIR and underpins generation and testing of new hypotheses in cancer mechanisms and personalised medicine development. PDCM Finder have expanded to organoids and cell lines and is now called CancerModels.Org. PDCM Finder was launched in April 2022 as successor of PDX Finder portal, which focused solely on patient-derived xenograft models.

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• SciCrunch
• 3 years ago - by Anonymous

Advanced infusion device for drug delivery applications in mice, rats and larger animals. With versatile programmable functions and refillable reservoir, this implantable infusion pump enables full control over dosing studies and empowers researchers to execute even the most complex dosing protocols, including multiple bolus dosing, variable/constant delivery, escalating drug administration, and more.

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• dkNET
• 3 years ago - submitted by Mahad Ahmed

Syringe pump is built with 2 separate pump drives capable of independent pulseless, reproducible rates and movement. Programmable multi-step and cycle mode allows users to input complex flow profiles or perform flow cycling from computer Labview or the pump itself. This multi-channel syringe infusion pump system also can be expanded with 2-syringe push and pull rack attachment to increase the total syringe capacity to four.

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• dkNET
• 3 years ago - submitted by Mahad Ahmed

Software conformational search method for efficient generation of bioactive conformers. Used for generating conformations for ligand-based virtual screening in molecular modeling and in drug discovery. Schrödinger has completely rewritten the ConfGen application for producing diverse, low-energy 3D structures of compounds and to improve recovery of bioactive conformations among generated conformers and drastically speed conformer generation.

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• 3 years ago - by Anonymous