Curator Dashboard

Software R package for assessing overall diagnostic ability of binary classifier. Used to evaluate threshold bound metrics, construct confidence interval of ROC curve and AUC, construct empirical gains table, visualize ROC curve, visualize KS plot, visualize lift plot.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for visually combining expression data with functional analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web tool for RNA subcellular localizations analysis. RNALocate v2.0 is updated resource for RNA subcellular localization with increased coverage and annotation.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for prediction of clinical chemotherapeutic response from tumor gene expression levels. Used to predict phenotypes from gene expression microarray data, gene expression microarray data,

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software MATLAB toolbox which implements multiple algorithms for independent component analysis and blind source separation of group and single subject functional magnetic resonance imaging data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package to compute time dependent Receiver Operating Characteristic curve from censored survival data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for protein identification and protein expression analysis. Used to identify proteins and search large numbers of post translational modifications, without increasing search time or false positives. Compatible with all proteomics MS/MS systems.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Medical image viewer that allows to load overlays and draw regions of interest. Runs on Windows, Linux and OSX. Allows to view 2D slices and renderings of your brain imaging data. It can display many image formats and includes graphical interface for dcm2nii to convert DICOM images to NIfTI format. Allows to draw regions of interest which can aid lesion mapping and fMRI analysis.

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• RRID
• 3 years ago - by Anonymous

Software R package to facilitate detection and analysis of clinical trial registration numbers. Data package of regular expressions and provides some R functions for implementing the regexes. Data Package and R Functions for Clinical Trial Registries and other MEDLINE Databanks.

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• RRID
• 3 years ago - by Anonymous

Gold standard dataset of software mentions in research publications. Provides dataset of annotated software mentions from full text academic literature in biomedicine and economics directly converted from published PDFs with reproducible infrastructure. Includes provenance, and is formatted for immediately usefulness in NLP. Useful for supervised learning at scale.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Family of healthcare databases and related software tools and products developed through Federal-State-Industry partnership. Databases bring together data collection of State data organizations, hospital associations, private data organizations, and Federal government to create national information resource of encounter-level healthcare data. HCUP includes largest collection of longitudinal hospital care data in the United States, with all-payer, encounter-level information beginning in 1988. These databases enable research on broad range of health policy issues, including cost and quality of health services, medical practice patterns, access to healthcare programs, and outcomes of treatments at the national, State, and local market levels.

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• RRID
• 3 years ago - by Anonymous

US-based non-profit engaging bioimaging scientists across Canada, Mexico, the US and its territories by creating inclusive and supportive community to support bioimaging scientists through on-line events, registration assistance for professional development opportunities and the chance to visit peer imaging facilities to learn new techniques, develop or expand management skills, and/or image data management and analysis skills., through Exchange of Experience program.

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• RRID
• 3 years ago - by Anonymous

Software R package for detection of low frequency aberrant methylation events in large data sets obtained by methylation profiling using array or high-throughput bisulfite sequencing. Provides functions to visualize found aberrantly methylated regions, to generate sets of all possible regions to be used as reference sets for enrichment analysis, and to generate biologically relevant test data sets for performance evaluation of AMR/DMR search algorithms.

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• RRID
• 3 years ago - submitted by Oleksii Nikolaienko

UK Renal Registry collection of data from acute kidney injury patients in England.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Integrated web server developed for Ribo-seq data analysis. Platform for analysis and annotation of ribosome profiling data to decode mRNA translation at codon resolution.Web based service to centralize Ribo-seq data analyses, including data cleaning and quality evaluation, expression analysis based on RPFs, codon occupancy, translation efficiency analysis, differential translation analysis, functional annotation, translation metagene analysis, and identification of actively translated ORFs.

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• RRID
• 3 years ago - by Anonymous

Jackson Laboratory Microscopy Services, located in Bar Harbor, Maine and Farmington, Connecticut, provides essential support to their faculty labs. Service includes standard widefield microscopy; advanced fluorescent microscopy, including confocal and spinning disk; 2-photon and fluorescence lifetime microscopy ; longitudinal observation or live cell imaging, including imaging of iPS and ES cells under various environmental conditions; laser capture microdissection, image analysis and 3D visualization; high throughput cell based screening; brightfield slide scanning; automated fluorescence slide scanning.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core supports high performance computing and data management needs of UBC researchers by providing consultation, expertise, and access to digital research infrastructure such as high performance computing clusters and storage.

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• RRID
• 3 years ago - by Anonymous

Software Python tool for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files.

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• RRID
• 3 years ago - by Anonymous

Open source software that automatically registers coronal slices and quantifies fluorescent markers. Python based, AI registration algorithm for slice matching to the Waxholm rat atlas. Slice quantification can be trained on any atlas, which allows use for other subjects such as mice, zebrafish, and humans. AI-based software for registration and analysis of fluorescent markers on coronal brain slices.

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• RRID
• 3 years ago - submitted by Jensen Palmer

Open source software Learning Record Store implementing the xAPI (Tin Can API) e-learning standard.Type of data repository designed to store learning activity statements generated by xAPI (Tin Can) compliant learning activities.

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• RRID
• 3 years ago - submitted by Manuel Oellers