Curator Dashboard

Provides platform for visualizing multimodal single cell data across mammalian brain and aims to empower researchers to explore and analyze multiple whole brain datasets simultaneously. Allen Institute and its collaborators continue to add new modalities, species, and insights to the ABC Atlas. Atlas as part of Brain Knowledge Platform will enable neuroscience community to identify more cell types in brain; Investigate spatial location of cell types; Investigate gene expression and co-expression patterns in cell types; Refine boundaries and knowledge of brain regions defined by gene expression.

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• 3 years ago - submitted by Anita Bandrowski

Software toolkit for Machine Learning Driven Data Analysis. Simplifies machine learning for data exploration, visualization and analysis.

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• 3 years ago - submitted by Ali Hashemi Gheinani

Enhanced application on generating single cell gene expression profile for high resolution spatial transcriptomics. Registers spatial gene expression map and cell membrane/wall staining image with nuclei staining image as intermediary, thus cell membrane/wall outlines can be directly segmented from cell membrane/wall staining image without correcting nuclei boundaries.

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• 3 years ago - submitted by Tongxuan Lv

Collection of statistical summaries for number of common cancer types. They were developed to provide quick overview of frequently requested cancer statistics. Available statistics may include incidence, mortality, survival, stage, prevalence, and lifetime risk. Links to additional resources from NCI including risk factors, treatment, and clinical trials are also provided. The statistics will be updated annually to coincide with the SEER data release.

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• 3 years ago - submitted by Edyta Vieth

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• 3 years ago - by Anonymous

American healthcare company that provides data, analytics, and research to the life sciences industry, with particular focus on oncology and rare diseases.

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• 3 years ago - by Anonymous

Software digital library and cyberinfrastructure facilitating discovery and utilization of data and knowledge in published documents.

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• 3 years ago - submitted by Anita Bandrowski

Software for image processing. Reads data captured by FV1200/FV1000/FV500/FV300 microscopes. Images saved with FV file format (OIF, OIB, FV Multi-Tiff) can be read.

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• RRID
• 3 years ago - by Anonymous

Software for managing geochemical data created by individual geochronology laboratory. Designed for flexibility and extensibility, so that it can be tailored to the needs of individual analytical labs that manage wide variety of data. Database set up for metadata tracking.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Map database allows to record your geological observations and uses your location to provide spatially informed suggestions for nearby geologic units, time intervals, and fossils.

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• RRID
• 3 years ago - submitted by Anita Bandrowski

Ecocyte Bioscience offers weekly delivery service of Xenopus laevis oocytes for expression studies. Products include defolliculated and ready to use Xenopus Laevis oocytes used for mRNA or cDNA injections or other electrophysiological experiments.

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• dkNET
• 3 years ago - submitted by Ecocyte Bioscience

NutritionQuest provides questionnaires and screeners for assessment of diet and physical activity. Questionnaires are derived from and based on Dr. Block's landmark research into the development of valid, user-friendly assessment methods. Questionnaires and dietary analysis services are available to nutritional epidemiologists and public health researchers.

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• SciCrunch
• 3 years ago - by Anonymous

Low cost platform for multianimal chronic Local Field Potential video monitoring with Graphical User Interface for seizure detection and behavioral scoring. Enables chronic monitoring of several animals simultaneously, synchronizes bilateral local field potential and video streams in real time, and parses recorded data into manageable file sizes. Hardware solution leverages Intan and Open Ephys acquisition systems and software solution is implemented in Bonsai. Data are synchronized and parsed in Bonsai, allowing for flexibility and scalability of up to 128 channels per animal. The use of Intan adapter board for LFP video recordings allows compatibility with large variety of recording devices. Custom made electrodes and cables were components for the chronic LFP recordings. Used as acquisition system for long term video neurophysiology recordings.

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• 3 years ago - submitted by Kevin Chavez Lopez

Web server predict secondary structures of single stranded RNA or DNA sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software phylogenetic tree analysis package. Phylogenetic tree management, exploration and display package.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web tool for detecting PROSITE signature matches in protein sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides risk regression models and prediction scores for survival analysis with competing risks.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software PCA-based toolkit for compression and analysis of molecular simulation data. Used for compression and analysis of molecular dynamics (MD) simulation data.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package provides bindings for the Geospatial Data Abstraction Library. Translator library for raster and vector geospatial data formats.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python package for wavelet analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth