Curator Dashboard

Provides services for genomics research that range from sequencing to data analysis. Instruments available include Illumina NextSeq 2000, 10x Genomics Chromium iX Controller, Agilent TapeStation 4200, and Qubit Flex Fluorometer.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software that quantifies vascular morphometry parameters like area covered by vessels, vessel width, skeleton length and branching or crossing points of vascular networks in tissues and in vitro assays.

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• RRID
• 3 years ago - by Anonymous

Software vector based drawing application for desk top publishing with Apple's macOS operating system. Illustration or drawing software application that offers vector-based graphics editing and creation capabilities for creating simple not-photographic drawings, technical diagrams and illustrations such as logos, icons, buttons and stylized art.

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• RRID
• 3 years ago - by Anonymous

Software package provides IPython kernel for Jupyter.

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• RRID
• 3 years ago - by Anonymous

Software package provides interface to HDF5 library from Python. The low-level interface is intended to be complete wrapping of the HDF5 API, while the high-level component supports access to HDF5 files, datasets and groups using established Python and NumPy concepts.

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• RRID
• 3 years ago - by Anonymous

Software application as algorithm for identifying motifs from basepair-level importance scores computed on genomic sequence data.

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• RRID
• 3 years ago - by Anonymous

Software application for detection of sequences that regulate gene transcription, such as enhancers and silencers, but other types of biological regulation may be mediated by motif clusters too.

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• RRID
• 3 years ago - by Anonymous

Software motif comparison tool. Compares one or more motifs against database of known motifs, ranks motifs in database and produces alignment for each significant match.

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• RRID
• 3 years ago - by Anonymous

Web application to download database for motif enrichment, motif annotations,cluster-buster implementation, precomputed regions for creating gene-based databases and to download lists of transcription factors for human, mouse and fly, chip-seq tracks annotations.

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• RRID
• 3 years ago - by Anonymous

Software application as Python extension for quick access to bigWig and bigBed files.

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• RRID
• 3 years ago - by Anonymous

Software application as bias factorized, base-resolution deep learning models of chromatin accessibility.

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• RRID
• 3 years ago - by Anonymous

Software package provides implementation of the Enformer model and examples on running the model.

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• RRID
• 3 years ago - by Anonymous

Software application as platform independent protocol and FIJI plug-in to correct for autofluorescence using standard filter sets and illumination conditions. Spectral autofluorescence correction method based on simple 2- or 3-Channel images implemented in Python and Fiji. Used for performing spectral autofluorescence correction on biological images.

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• RRID
• 3 years ago - by Anonymous

Software graph neural network based tool for spatial domain deciphering. Used for deciphering spatial domains from spatially resolved transcriptomics.

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• RRID
• 3 years ago - submitted by bgi sgae

Software Python library (C++ backend) for degree preserving network randomization.

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• RRID
• 3 years ago - submitted by Michael Zietz

Core supports areas of research from Heavy Structures and Concrete design, fabrication and testing to Non-Destructive Testing, development and construction of novel fibre, polymers and composite materials.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Provides access and expert support to run cutting-edge 3D and 3D time-lapse imaging experiments.Provides access to X-ray instruments, technical support for new and existing users, expertise to design complex experiments, infrastructure and resources to analyse 3D and 4D data.Funded by the Engineering and Physical Sciences Research Council (EPSRC).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web server for protein-protein and protein-DNA/RNA docking based on hybrid strategy. With input information for receptor and ligand molecules either amino acid sequences or Protein Data Bank structures, the server automatically predicts their interaction through hybrid algorithm of template-based and template-free docking.

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• RRID
• 3 years ago - by Anonymous

Software tool for scRNA and spatial transcriptomics.Used to generate RNA data close to real bulk RNA-seq with constraints of scRNA-seq data, based on keras and tensflow framework.

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• RRID
• 3 years ago - submitted by Fan Liu

Core provides support for generation of novel animals including mice, rats and swine models using CRISPR or transgenic technology, cryopreservation, rederivation, and IVF recovery of rodent animal models.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth