Curator Dashboard

Web based platform that facilitates knowledge resolution by enabling users to traverse growing network of input datasets, semantically annotated API endpoints, and data visualization tools contributed by the ecosystem. Via user friendly web based user interface, workflows can be constructed from these building blocks without technical expertise.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

FAIR API ecosystem for inter-connected biomedical knowledge. Provides three components in its API development ecosystem: family of high-performance APIs for accessing up-to-date annotations for genes, genetic variants, chemicals and drugs; provides BioThings API packages its API-development best practice into reusable Software Development Kit to help other bioinformaticians to build same high-quality API to distribute their own specific knowledge; BioThings API provides platform to foster findability and interoperability across community developed biomedical APIs. Provides tools for authoring API metadata following community supported OpenAPI standard and hosts standardized interactive API documentation. Defines set of OpenAPI extensions to provide biomedical specific semantic annotations.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Software statistical framework for mapping risk genes from de novo mutations in whole genome sequencing studies.

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• RRID
• 3 years ago - submitted by Quetzally Medina

Analyzer used for high throughput full range single cell analysis. Chromium X runs high-throughput assays. It runs all single cell assays, including high-throughput assays for Single Cell Immune Profiling and Single Cell Gene Expression.

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• RRID
• 3 years ago - by Anonymous

Chromium iX offers cost effective, lower throughput single cell analysis, and can be upgraded to the high throughput full-range Chromium X.Chromium iX does not run high-throughput (HT) assays.

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• RRID
• 3 years ago - by Anonymous

Leica TP1020 tissue processor is available in four configurations: basic instrument, basic instrument with vacuum, basic instrument with fume control system and basic instrument with both vacuum and fume control. Used for gentle specimen processing and high level of specimen safety at all stages of processing run.

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• RRID
• 3 years ago - by Anonymous

Software suite provides plugins to enhance 3D capabilities of ImageJ.

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• RRID
• 3 years ago - by Anonymous

Transdermal Glomerular Filtration Rate monitor used to assess renal function in mouse and rat models of acute kidney injury and chronic kidney disease.

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• RRID
• 3 years ago - by Anonymous

Software package annotates genetic variants with their predicted effect on splicing. Used to identify splice variants.

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• RRID
• 3 years ago - submitted by Quetzally Medina

Variability analysis of proteomics data used for deep learning.

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• RRID
• 3 years ago - submitted by Veit Schwämmle

Provides access to highly specialized and custom genomics and epigenomics assays that Genomics Core Facility does not currently support. Examples include ATAC sequencing; RUN sequencing;Tag sequencing;Chromatin immunoprecipitation;Custom assays. Offers hands-on experiences and training for researchers in genomic technologies, methodologies, and instrumentation.

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• SciCrunch
• 3 years ago - submitted by Craig Praul

Advanced 3D printing facility enables digital design, prototyping, and small scale production as integrated innovation hub and shared use facility for innovation and commercialization for investigators spanning the Stanford campus and Silicon Valley.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core for collaborative human neuroscience research provides access to technology and expertise to high density electroencephalography recording and transcranial magnetic stimulation studies in human subjects.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Core in part of Bioengineering Department at Stanford University and is the main service provider of integrated microfluidic devices on Stanford campus servicing universities and academic institutions.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software R package for genomic interval processing.Genomic regions processing using open-source command line tools to perform genome arithmetic e.g indexing, formatting and merging.

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• RRID
• 3 years ago - by Anonymous

Software high throughput data extraction package for LC-MS data.Targeted Liquid Chromatography-Mass Spectrometry data processing package for relative quantitation of glycopeptides.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web server for local superposition free score for comparing protein structures and models using distance difference tests. Superposition free score that evaluates local distance differences of all atoms in model, including validation of stereochemical plausibility.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web integrated protein structure and function prediction server. Integrated server for modelling protein structures and functions from amino acid sequences.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web server as ultra fast approach for large scale protein structure similarity searching.The upload protein structure file should be in PDB format. Used for searching similar protein structures by aligning input structure with the whole PDB library.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web based survival analysis tool tailored for medical research. Used to assess correlation between expression of all genes (mRNA, miRNA, protein) and survival in samples from tumor types including breast, ovarian, lung, gastric, colon cancer, AML, and myeloma.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth