Curator Dashboard

Software language-theory based homology detection tool across multiple large genomes.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software library of sequence alignment algorithms implemented in Java.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as partner script to the popular ncbi-genome-download script. Allows to download sequences from GenBank/RefSeq by accession through the NCBI ENTREZ API.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Web-compatible database search or multiple alignment viewer, Software tool as command line utility that extracts and reformats the results of a sequence database search or a multiple alignment, optionally adding HTML markup for web page layout. It can also be used as a filter to extract and convert searches or alignments to common formats.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package as plotting tool for long read sequencing data and alignments.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package that can be used to identify structural genomic variations in long-read sequencing data, such as data produced by Oxford Nanopore Technologies� MinION, GridION or PromethION instruments, or Pacific Biosciences RSII or Sequel sequencers.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for structural alignment of multiple protein structures. Used to produce sequence alignment. Reports multiple sequence alignment and corresponding superposition of structures.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to remove reads mapping to the lambda phage genome from a fastq file.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software basecaller for Oxford Nanopore Technologies sequencing data. Oxford Nanopore Basecaller.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tools to perform various types of diffusion MRI analyses, from various forms of tractography through to next-generation group-level analyses.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Open source multi platform molecular visualization program.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for single locus species delimitation. Implements fast method to compute the ML delimitation from inferred phylogenetic tree of the samples.Used to handle very large biodiversity datasets.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software Python implementation of MacroMolecular Transmission Format API, decoder and encoder. Repository holds the Python 2 and 3 compatible API, encoding and decoding libraries.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool that infers motifs in set of sequences to infer exceptionnal sites as binding sites in DNA sequences. 1.4 version allows to infer motifs written on any alphabet in any kind of sequences. Allows to deal with motifs associated by some distance constraints. Used to group under unique model different occurrences composed of several boxes separated by spacers of different lengths.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool for the design of multiplex pyrosequencing assays.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software package to create specialized dictionaries for medical terms used in various languages.German medical dictionary words.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Command lines tool to annotate miRNAs with standard mirna/isomir naming.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool to perform detection and assembly of DNA insertion variants in NGS read datasets with respect to reference genome.Used to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the donor genome.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software OLC-based de novo assembler for noisy long reads.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Software tool as reference implementation of probabilistic sequence overlapping algorithm. Used to detect overlaps between noisy long-read sequence data.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth