Curator Dashboard

United States Cancer Statistics public information data provided by Centers for Disease Control and Prevention.

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• RRID
• 3 years ago - by Anonymous

Web application to link single-cell epigenomes and cell types.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Portal used to find and download any of data sets published on CELLxGENE. Allows to download and visually explore data to understand functionality of human tissues at cellular level. Optimized for finding, exploring, and reusing single cell data. Collections Page lists collections hosted on CELLxGENE Discover and metadata that define tissue, assay, disease, organism, and cell count for each collection. Once you find published dataset of interest on CELLxGENE Discover, you can click on the explore button below the dataset description to explore the cells of that dataset using the CELLxGENE Explorer.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Web application for automated cell type annotation for scRNA-seq datasets. Allows for cell prediction using either built-in or custom models, in order to assist in accurate classification of different cell types and subtypes.

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• RRID
• 3 years ago - by Anonymous

Web biological metadata server to view, store, and share your sample metadata in form of Portable Encapsulated Projects. PEPhub takes advantage of PEP biological metadata standard to store, edit, and access your PEPs in one place. Components include database where PEPs are stored; API to programmatically read and write PEPs in database; web based user interface to view and manage these PEPs via front end.

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• RRID
• 3 years ago - submitted by Nathan LeRoy

Software accurate somatic mutation detection pipeline implementing stochastic boosting algorithm to produce somatic mutation calls for both single nucleotide variants and small insertions and deletions. NGS variant calling and classification.

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• RRID
• 3 years ago - by Anonymous

Software tool as mapping based variant caller that implements several calling models within unified haplotype aware framework. Variant caller that uses polymorphic Bayesian genotyping model capable of modeling sequencing data from range of experimental designs within unified haplotype aware framework. Bayesian haplotype based mutation calling.

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• RRID
• 3 years ago - by Anonymous

Software R package to integrate popular Bayesian modeling methods into tidy data plus ggplot workflow.

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• RRID
• 3 years ago - by Anonymous

Software tool as unified interface to visualize statistical results of popular R packages. Provides unified interface that enables users to use one line of code to visualize statistical results of many R packages using ggplot2 idioms. Allows ggplot2 to handle some popular R packages.

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• RRID
• 3 years ago - by Anonymous

Software digital painting and drawing application. Used to create figures. Built for the latest stylus and touch devices, now including iPhones. Collection of vector and raster brushes, live brushes, to deliver natural painting and drawing experience.Vector and raster graphics editor developed by Adobe primarily for digital painting. Originally designed for the Apple iPad with Pencil support.

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• RRID
• 3 years ago - by Anonymous

ZEN is the universal user interface you will see on every imaging system from ZEISS. For simple and routine works, ZEN leads you straight to result. For complex research experiments, ZEN offers the flexibility to design multi-dimensional workflows the way you wanted.

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• RRID
• 3 years ago - submitted by Farzaneh Tamnanloo

Software tool for working with whole slide images. Digital microscope application for supporting histopathological diagnostic workflow and microscope examination process. Advanced slide viewing software used in clinical pathology and research.

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• RRID
• 3 years ago - by Anonymous

Open-source physical computing platform based on I/O board and development environment that implements the Processing/Wiring language. Arduino can be used to develop stand-alone interactive objects or can be connected to software on your computer.

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• RRID
• 3 years ago - submitted by Edyta Vieth

Cross-platform, complete Integrated Development Environment for application developers to create applications for multiple desktop, embedded, and mobile device platforms, such as Android and iOS. It is available for Linux, macOS and Windows operating systems. In addition, you can use the experimental WebAssembly plugin to build applications in web format and run them in web browsers.

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• RRID
• 3 years ago - submitted by Edyta Vieth

System to study motor coordination using natural fear of falling response with reliability and accuracy. System measures motor function, motor learning, coordination, and equilibrium in both rats and mice.

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• RRID
• 3 years ago - submitted by Farzaneh Tamnanloo

Software library of easy testing ML models directly from pandas DataFrames, while keeping the flexibility of using scikit-learn’s models.

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• RRID
• 3 years ago - submitted by Federico Raimondo

Device connects wireless running wheels to data acquisition computer via a USB cable.All wheels must be set to the same address as the hub with which they communicate.Hub relays data to Wheel Manager Software.

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• RRID
• 3 years ago - by Anonymous

Allows monitoring of wireless wheel running activity without running wires.

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• RRID
• 3 years ago - by Anonymous

Optimized processor for fiber photometry.RZ5P is intended for use with TDT’s Synapse software.

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• RRID
• 3 years ago - by Anonymous

Core provides consultative, laboratory, and bioinformatic services for next generation sequencing based applications.Core services include Pre- and post-experimental consultation to determine proper experimental approach, design, and interpretation; Standalone RNA preparation, RNA and DNA Bioanalyzer analyses, chromatin shearing/shear checks; Sample quality assessment of DNA and RNA using the BioAnalyzer and Qubit assays; Library preparation, sequencing, and analysis of transcriptomes (RNA-seq), cistromes (ChIP-seq), chromatin accessibility (ATAC-seq); Standalone sequencing on NextSeq500; Multiplexed 10x Single Cell/Nucleus Library RNA-seq Droplet generation, Library Preparation; Basic data analysis: quality assessment and normalization, genomic alignment, differential expression/enrichment, functional enrichment analysis (overrepresentation and GSEA), sample clustering, and motif enrichment; Bespoke data analysis, including integration of complex ChIP-seq and RNA-seq data sets, single-cell sequencing analyses.Core is located on the 7th floor of the Center for Life Sciences building in the Longwood Medical area (3 Blackfan Circle, CLS-728).

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth