Curator Dashboard

Software tool allows to assess dMRI data both at single subject and group levels.Calculates average SNR across all voxels within brain mask to give summary measure of overall quality of dataset. Used to generate single subject and study wise reports and databases.

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• 3 years ago - submitted by Edyta Vieth

Software tool for estimating and correcting susceptibility induced distortions.

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• 3 years ago - submitted by Edyta Vieth

Software tool for correcting eddy currents and movements in diffusion data. Used to predict undistorted data, to which actual observed images can be aligned, to estimate and to correct for volume-to-volume movement and off-resonance fields, to signal dropout caused by movement during diffusion encoding, within-volume movement and movement-induced changes of susceptibility-induced off-resonance field. In addition to correcting for these effects, the output from this framework offers description of off resonance and subject movement effects present in uncorrected data.

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• 3 years ago - submitted by Edyta Vieth

Software command line tool for automated tractography. Standardised protocols for automated tractography in human and macaque brain.

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• 3 years ago - submitted by Edyta Vieth

Software tool to improve sensitivity, objectivity and interpretability of analysis of multi-subject diffusion imaging studies.

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• 3 years ago - submitted by Edyta Vieth

Software toolbox for analysis of diffusion weighted images.

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• 3 years ago - submitted by Edyta Vieth

Software tool provides general pipeline for processing anatomical images.

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• 3 years ago - submitted by Edyta Vieth

Software tool for registering cortical surfaces. Capable of driving alignment using wide variety of descriptors of brain architecture, function and connectivity.

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• 3 years ago - submitted by Edyta Vieth

Software tool for automated segmentation of white matter hyperintensities. Classifies image’s voxels based on their intensity and spatial features, and the output image represents the probability per voxel of being WMH. Flexible in terms of MRI modalities to use and offers different options for weighting spatial information, local spatial intensity averaging, and different options for choice of number and location of training points.

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• 3 years ago - submitted by Edyta Vieth

Software flexible tool for subcortical segmentation. It differs from FIRST in that it can use complementary information in different MRI modalities and is less reliant on manual segmentations.

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• 3 years ago - submitted by Edyta Vieth

Software tool to estimate total brain tissue volume, from single image, normalized for skull size.

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• 3 years ago - submitted by Edyta Vieth

Software package for both single-time-point and two-time-point analysis of brain change. Used to estimate percentage brain volume change between two input images, taken of the same subject, at different points in time.

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• 3 years ago - submitted by Edyta Vieth

Software tool to analyse structural data. Voxel based morphometry style analysis carried out with FSL tools.

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• 3 years ago - submitted by Edyta Vieth

Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another.

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• 3 years ago - submitted by Edyta Vieth

Sotware automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration.

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• 3 years ago - submitted by Edyta Vieth

Software model based segmentation and registration tool. Used for segmentation of sub-cortical structures. Introduces basic segmentation and vertex analysis for detecting group differences.

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• 3 years ago - submitted by Edyta Vieth

Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction.

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• 3 years ago - submitted by Edyta Vieth

Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain.

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• 3 years ago - submitted by Edyta Vieth

Software toolbox for kinetic model inversion to the data using Bayesian algorithm. Performs kinetic model inversion on ASL label control difference data.

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• 3 years ago - submitted by Edyta Vieth

Software command-line tool for approximate Bayesian inference using generative signal models.

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• 3 years ago - submitted by Edyta Vieth