Curator Dashboard

Software tool to identify important genes from genome-scale CRISPR-Cas9 screens. Used for prioritizing single-guide RNAs, genes and pathways in genome-scale CRISPR/Cas9 knockout screens.

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• 2 years ago - by Anonymous

Provides systematic review literature searching services, writing review services, and resources in print and electronic format to faculty, students, and researchers in the schools of the health sciences. The Library also manages the SPSS and EndNote licenses for the campus.

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• 2 years ago - by Anonymous

Web server to check whether given list of genes can be associated with stemness. Used to identify sets of genes considered essential to define stem cells. Used to explore presence of stemness signatures in user-defined gene sets. Analysis tool, based on curation of published stemness signatures defined by gene expression, RNAi screens, Transcription Factor binding sites, literature reviews and computational approaches.

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• 2 years ago - by Anonymous

Software tool as set of Python scripts to modify GROMACS topology files, by adding content from different topology files and other GROMACS input files. Useful, particularly when system components are assembled outside of GROMACS, or in different steps within GROMACS. This helps prevent users from having to copy and paste significantly large blocks of text within topology files.

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• 2 years ago - submitted by Bryan Raubenolt

Core facility is dedicated to structural characterization of biological samples and microcrystals using cryo-electron microscopy. CryoEM workflows including, single-particle CryoEM, Cryo-electron tomography , and Micro crystal electron diffraction. Instrumentation includes TFS 200kV Glacios CryoTEM, equipped with zero-loss Selectris Energy Filter, Flacon 4i Direct Electron Detector, and Ceta-D camera, Pelco Easy Glow Discharger, TFS Vitrobot Mark IV, and Leica EM GP2. We also present all the capacities for storing and shipping samples. Facility has Data storage Server and Live processing workstation for our users� convenience, including data processing suites RELION and CryoSPARC available at our campus supercomputer Swan cluster at the Holland Computer Center.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core offers education, analysis, and computational services in the area of bioinformatics and computational biology. Offers initial consultations to help with experimental design and power analysis of 'omics data for grant submissions and bioinformatics needs for current projects.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

3D printed pacifier shaped mouthpiece for fMRI compatible gustometers to deliver up to eight liquids during fMRI task. Can be utilized to study flavor, taste reactivity, reward or punishment with food, conditioning, and neurodegenerative conditions such as Alzheimers and Parkinsons, since taste and smell senses diminish early into disease acquisition.

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• 2 years ago - submitted by Jensen Palmer

Software application for network analysis and visualization of proteomics data. Cytoscape app that makes it easy to import STRING networks into Cytoscape, retains appearance and many of features of STRING, and integrates data from associated databases.

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• 2 years ago - by Anonymous

Database of Mass Spectrometry contaminants and pipeline for Affinity Purification coupled with Mass Spectrometry analysis. Contaminant repository for affinity purification mass spectrometry data. Database of standardized negative controls. Used to identify protein-protein interactions.

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• 2 years ago - by Anonymous

Research Data Management guidelines to serve as information resource to life science researchers in Sweden regarding research data management committed to principles of FAIR (Findable, Accessible, Interoperable and Reusable) research data.

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• 2 years ago - by Anonymous

Software application to quantify usage of alternative polyadenylation and cleavage sites in RNAseq data and identify genes whose usage of these sites varies across experimental conditions.

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• 2 years ago - submitted by Simon Bullock

Data publication platform for publication and hosting of research data. Data repository contains open access journals published at Ludwig-Maximillians University, Munich, Germany. Server provides direct access to research data sets produced by projects at LMU. Open Journals LMU. Open Data LMU.

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• 2 years ago - submitted by Luisa Fernanda Jimenez Soto

System offers dual energy X-ray absorptiometry assessment. Bone densitometry scan with enCORE v18 software platform. Meets International Society for Clinical Densitometry testing guidelines. Used to take measurements to work out the strength of bones in advanced bone and metabolic health clinical applications.

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• 2 years ago - by Anonymous

Portable ultrasound system that provides high rich image quality. User friendly for fast and critical clinical applications. Ultrasounds with Doppler.

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• 2 years ago - by Anonymous

Software virome analysis pipeline for analysis of Illumina sequence data. Integrated software platform for viral metagenomics.

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• 2 years ago - by Anonymous

Software set of pipelines bundled to map sequenced reads to their spatial location on tissue section, quantify corresponding gene expression levels and visually present spatial gene expression distribution.

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• 2 years ago - by Anonymous

Geomicrobiology analytical facilities consist of four different labs in the Green Earth Sciences Building. Main areas of study are: molecular, bio(geo)chemical, and ecological aspects of microbial cycling of nitrogen, carbon, and metals in environment diversity, distribution, and activity of microorganisms driving greenhouse gas cycling in ocean and beyond molecular biomarkers in modern organisms to refine our interpretations of microbial fossil record.

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• SciCrunch
• 2 years ago - by Anonymous

Provided services include molecular profiling of DNA and RNA on different platforms, Sanger sequencing, full service Next Generation Sequencing with different applications and bioinformatics, fragment analysis including human cell line authentication., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core specializes in metabolomic analysis. Provides Orbitrap Exploris 240 mass spectrometer, as well as dedicated staff for consultation and the analysis of biological samples.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software suite for finite element analysis and computer aided engineering.

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• 2 years ago - by Anonymous