Curator Dashboard

Software scalable cloud based pipeline that performs microbial calling for single cell RNA sequencing data, enabling meta analysis of the single cell host microbial studies from AWS Open Data and other public domain.

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• 2 years ago - submitted by Danqing Yin

Software application as multi-omics data analysis workflow. Comprises genome-wide DNA methylation, targeted metabolomics and behaviour data pre-processing, and integrative analysis methods. Individuals of a cohort are clustered using Similarity Network Fusion (SNF), latent feature dimensions are uncovered using different unsupervised methods including Multi-Omics Factor Analysis (MOFA) and Multiple Correspondence Analysis (MCA), and correlations between -omics and phenotype dimensions are determined in downstream analyses including results visualisation.

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• 3 years ago - submitted by Anna Niehues

ToxCodAn-Genome is a computational tool designed to annotate toxin genes in genomes of venomous lineages.

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• 3 years ago - submitted by Pedro Nachtigall

Machine Learning Cumulative Performance Score (MLcps), a novel evaluation metric for classification problems. MLcps integrates several pre-computed evaluation metrics into a unified score, enabling a comprehensive assessment of the trained model's strengths and weaknesses. We tested MLcps on four publicly available datasets, and the results demonstrate that MLcps provides a holistic evaluation of the model's robustness, ensuring a thorough understanding of its overall performance.

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• 3 years ago - submitted by Akshay Akshay

Machine Learning Cumulative Performance Score (MLcps), a novel evaluation metric for classification problems. MLcps integrates several pre-computed evaluation metrics into a unified score, enabling a comprehensive assessment of the trained model's strengths and weaknesses. We tested MLcps on four publicly available datasets, and the results demonstrate that MLcps provides a holistic evaluation of the model's robustness, ensuring a thorough understanding of its overall performance.

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• 3 years ago - submitted by Akshay Akshay

This repository contain the source code for the denoising of SR-SIM images.

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• 3 years ago - submitted by Zafran Hussain Shah

Four datasets cover two types of cell structures, tubulin filaments and vesicle structures. These datasets are structured so that the research community can easily use them for research on different image restoration tasks. The link provided contains the comprehensive details of the datasets.

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• SciCrunch
• 3 years ago - submitted by Zafran Hussain Shah

Web taxonomically informed mass spectrometry search tool, tackles limited microbial metabolite annotation in untargeted metabolomics experiments. Leveraging database of over 60,000 microbial monocultures, users can search known and unknown MS/MS spectra and link them to their respective microbial producers via MS/MS fragmentation patterns.

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• dkNET
• 3 years ago - submitted by Ko-Wei Lin

Software application for scanning sample specific miRNA regulation from bulk and single cell RNA sequencing data.

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• 3 years ago - submitted by Junpeng Zhang

Provides flow cytometry services. Instruments include Beckman Coulter CytoFLEX SRT sorter and CytoFLEX LX, as well as NanoAnalyzer from NanoFCM. Facility staff are able to assist with everything from experimental design, instrument training, sample collection, and data analysis.

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• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Branson Sonifier ultrasonic cell disruptor / homogenizers are versatile laboratory units suitable for broad range of liquid processing applications. Digital sonifier to disrupt cells, bacteria, spores, or tissue. Ideal for initiating and accelerating chemical, biochemical, and physical reactions, and for degassing liquids. Used to prepare emulsion to 0.01 micron, homogenize immiscible liquids, polymerize some materials, and depolymerize others.

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• 3 years ago - by Anonymous

Transmission electron microscope with maximum acceleration voltage of 120 kv.Microscope primarily used for sample screening.

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• 3 years ago - by Anonymous

System used for stereotaxic surgery on small animals (mice and rats).

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• 3 years ago - by Anonymous

Electrically controlled pneumatic microinjector designed to deliver and aspirate extremely small, precise volumes of liquid or gas (picoliters to microliters). It is primarily used in biological and medical research labs for microinjection into cells, transgenic organism creation, and patchingMulti-functional, motor-driven injector for precise control of small volumes.

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• 3 years ago - by Anonymous

Upright microscope platform for Life Science Research. System platform tailored to materials analysis tasks. System features include Universal stand transmitted-light; Motorized: luminous field stop; Light manager;Contrast manager; Motorized z-drive with 25nm step size; Reflected-light beam path; ACR for objectives; Apotome 3; 2- und 3-plate scanning stages; 2 TV tube motorized; Automatic image acquisition and analysis; 3D Imaging; Medium sample throughput; Multi-user environment.

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• 3 years ago - by Anonymous

System provides means to make quantification of number, length, area, and volume of cells, subcellular and macro structures in tissue specimens. Used to make discoveries in numerous areas of neuroscience, including neurodegenerative diseases, addiction, autism, neuropathy, memory, and behavior, as well as other research fields including pulmonary and kidney research, and toxicology.

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• 3 years ago - by Anonymous

Ensembl SARS-Cov2 data portal.

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• 3 years ago - by Anonymous

Web tool for translation of nucleotide sequence to protein sequence.

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• 3 years ago - by Anonymous

Software R package for high-throughput toxicokinetics. Pre-made models that can be rapidly tailored to various chemicals and species using chemical specific in vitro data and physiological information. Used for prediction toxicokinetics (chemical absorption, distribution, metabolism, and excretion by the body).

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• 3 years ago - by Anonymous

Software interface to use R from Python.

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• 3 years ago - by Anonymous