Curator Dashboard

Software R package to create HTML tables of descriptive statistics, as one would expect to see as the first table in medical epidemiological journal article. Used for generating tables of descriptive statistics in HTML.

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• 2 years ago - by Anonymous

Software survival analysis library written in Python.

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• 2 years ago - by Anonymous

Software Snakemake workflow for bacterial genome assembly plus polishing for Oxford Nanopore sequencing using multiple tools.

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• 2 years ago - by Anonymous

Software Snakemake workflow for scoring and comparing multiple bacterial genome assemblies from Illumina and Nanopore to reference genomes.

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• 2 years ago - by Anonymous

United States Cancer Statistics public information data provided by Centers for Disease Control and Prevention.

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• 2 years ago - by Anonymous

Web application to link single-cell epigenomes and cell types.

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• 2 years ago - submitted by Edyta Vieth

Portal used to find and download any of data sets published on CELLxGENE. Allows to download and visually explore data to understand functionality of human tissues at cellular level. Optimized for finding, exploring, and reusing single cell data. Collections Page lists collections hosted on CELLxGENE Discover and metadata that define tissue, assay, disease, organism, and cell count for each collection. Once you find published dataset of interest on CELLxGENE Discover, you can click on the explore button below the dataset description to explore the cells of that dataset using the CELLxGENE Explorer.

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• 2 years ago - submitted by Edyta Vieth

Web application for automated cell type annotation for scRNA-seq datasets. Allows for cell prediction using either built-in or custom models, in order to assist in accurate classification of different cell types and subtypes.

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• 2 years ago - by Anonymous

Web biological metadata server to view, store, and share your sample metadata in form of Portable Encapsulated Projects. PEPhub takes advantage of PEP biological metadata standard to store, edit, and access your PEPs in one place. Components include database where PEPs are stored; API to programmatically read and write PEPs in database; web based user interface to view and manage these PEPs via front end.

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• 2 years ago - submitted by Nathan LeRoy

Software accurate somatic mutation detection pipeline implementing stochastic boosting algorithm to produce somatic mutation calls for both single nucleotide variants and small insertions and deletions. NGS variant calling and classification.

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• 2 years ago - by Anonymous

Software tool as mapping based variant caller that implements several calling models within unified haplotype aware framework. Variant caller that uses polymorphic Bayesian genotyping model capable of modeling sequencing data from range of experimental designs within unified haplotype aware framework. Bayesian haplotype based mutation calling.

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• 2 years ago - by Anonymous

Software R package to integrate popular Bayesian modeling methods into tidy data plus ggplot workflow.

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• 2 years ago - by Anonymous

Software tool as unified interface to visualize statistical results of popular R packages. Provides unified interface that enables users to use one line of code to visualize statistical results of many R packages using ggplot2 idioms. Allows ggplot2 to handle some popular R packages.

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• 2 years ago - by Anonymous

Software digital painting and drawing application. Used to create figures. Built for the latest stylus and touch devices, now including iPhones. Collection of vector and raster brushes, live brushes, to deliver natural painting and drawing experience.Vector and raster graphics editor developed by Adobe primarily for digital painting. Originally designed for the Apple iPad with Pencil support.

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• 2 years ago - by Anonymous

ZEN is the universal user interface you will see on every imaging system from ZEISS. For simple and routine works, ZEN leads you straight to result. For complex research experiments, ZEN offers the flexibility to design multi-dimensional workflows the way you wanted.

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• 2 years ago - submitted by Farzaneh Tamnanloo

Software tool for working with whole slide images. Digital microscope application for supporting histopathological diagnostic workflow and microscope examination process. Advanced slide viewing software used in clinical pathology and research.

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• 2 years ago - by Anonymous

Open-source physical computing platform based on I/O board and development environment that implements the Processing/Wiring language. Arduino can be used to develop stand-alone interactive objects or can be connected to software on your computer.

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• 2 years ago - submitted by Edyta Vieth

Cross-platform, complete Integrated Development Environment for application developers to create applications for multiple desktop, embedded, and mobile device platforms, such as Android and iOS. It is available for Linux, macOS and Windows operating systems. In addition, you can use the experimental WebAssembly plugin to build applications in web format and run them in web browsers.

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• 2 years ago - submitted by Edyta Vieth

System to study motor coordination using natural fear of falling response with reliability and accuracy. System measures motor function, motor learning, coordination, and equilibrium in both rats and mice.

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• 2 years ago - submitted by Farzaneh Tamnanloo

Software library of easy testing ML models directly from pandas DataFrames, while keeping the flexibility of using scikit-learn’s models.

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• 2 years ago - submitted by Federico Raimondo