Curator Dashboard

Software tool for registering cortical surfaces. Capable of driving alignment using wide variety of descriptors of brain architecture, function and connectivity.

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• 2 years ago - submitted by Edyta Vieth

Software tool for automated segmentation of white matter hyperintensities. Classifies image’s voxels based on their intensity and spatial features, and the output image represents the probability per voxel of being WMH. Flexible in terms of MRI modalities to use and offers different options for weighting spatial information, local spatial intensity averaging, and different options for choice of number and location of training points.

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• 2 years ago - submitted by Edyta Vieth

Software flexible tool for subcortical segmentation. It differs from FIRST in that it can use complementary information in different MRI modalities and is less reliant on manual segmentations.

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• 2 years ago - submitted by Edyta Vieth

Software tool to estimate total brain tissue volume, from single image, normalized for skull size.

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• 2 years ago - submitted by Edyta Vieth

Software package for both single-time-point and two-time-point analysis of brain change. Used to estimate percentage brain volume change between two input images, taken of the same subject, at different points in time.

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• 2 years ago - submitted by Edyta Vieth

Software tool to analyse structural data. Voxel based morphometry style analysis carried out with FSL tools.

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• 2 years ago - submitted by Edyta Vieth

Software tool to perform linear registration, meaning that it will translate, rotate, zoom and shear one image to match it with another.

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• 2 years ago - submitted by Edyta Vieth

Sotware automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration.

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• 2 years ago - submitted by Edyta Vieth

Software model based segmentation and registration tool. Used for segmentation of sub-cortical structures. Introduces basic segmentation and vertex analysis for detecting group differences.

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• 2 years ago - submitted by Edyta Vieth

Software tool to segment 3D image of brain into different tissue types like Grey Matter, White Matter, CSF, etc., whilst also correcting for spatial intensity variations also known as bias field or RF inhomogeneities. Used to perform tissue type segmentation and bias field correction.

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• 2 years ago - submitted by Edyta Vieth

Software tool for quantification of perfusion and other haemodynamic parameters from Dynamic Susceptibility Contrast perfusion MRI of the brain.

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• 2 years ago - submitted by Edyta Vieth

Software toolbox for kinetic model inversion to the data using Bayesian algorithm. Performs kinetic model inversion on ASL label control difference data.

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• 2 years ago - submitted by Edyta Vieth

Software command-line tool for approximate Bayesian inference using generative signal models.

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• 2 years ago - submitted by Edyta Vieth

Software tool to use at both the subject and group level to decompose FMRI data into time courses and spatial maps using Independent Component Analysis. Used to decompose single or multiple 4D data sets into different spatial and temporal components.

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• 2 years ago - submitted by Edyta Vieth

Software tool for high quality model based FMRI data analysis. Used for preprocessing and statistical analysis of FMRI data.

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• 2 years ago - submitted by Edyta Vieth

Microscopy Core is collaboration of Broad Stem Cell Research Center and Department of Molecular, Cell and Developmental Biology at UCLA. Provides high resolution technologies for imaging and analyzing molecular and structural organization of cells and tissue as well as bioengineered materials. Services include confocal, wide field fluorescence and live cell imaging, as well as image analysis software.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Whole organism atlas utilizing 2D and 3D imaging. Atlas at cellular resolution serves as foundation for characterization of tissue and cellular change in Daphnia.

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• 2 years ago - by Anonymous

Software application as interactive program for performing power and sample size calculations. Can determine the sample size needed to detect specified alternative hypothesis with required power, the power with which specific alternative hypothesis can be detected with given sample size, or the specific alternative hypotheses that can be detected with given power and sample size.

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• 2 years ago - by Anonymous

Unit is part of Tulane National Primate Research Center. Provides services including routine husbandry care for animal colonies, reporting of animals abnormal clinical signs or activities to veterinary medical staff and faculty. Animal Care Technicians provide support during diagnostic and therapeutic procedures and administration of preventive medicine program. Coordinates its activities with research personnel to provide assistance, equipment and support for their work. After hours care includes administration of treatments, collection of biologic samples for research activities and observation of animals. TNPRC facilities are accredited by Association for Assessment and Accreditation of Laboratory Animal Care International (AAALAC).

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• 2 years ago - by Anonymous

Software tool as Python based synaptic vesicle classifier algorithm to identify neurotransmitter vesicles in electron microscopy images using Pytorch.

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• 2 years ago - submitted by Jensen Palmer