Curator Dashboard

Open, global repository as central resource for reagents, protocols, panels, publications, software, and datasets. In addition to IBEX, we support standard, single cycle multiplexed imaging (Multiplexed 2D imaging), volume imaging of cleared tissues with clearing enhanced 3D (Ce3D), highly multiplexed 3D imaging (Ce3D-IBEX), and extension of the IBEX dye inactivation protocol to the Leica Cell DIVE (Cell DIVE-IBEX). Committed to sharing knowledge related to multiplexed imaging. Antibody validation community knowledgebase.

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• RRID
• 2 years ago - submitted by Anita Bandrowski

Software for preclinical imaging integrated with Bruker MRI spectrometers. Used with Bruker MRI, PET/MR, and PET/CT instruments. Enables easy and high throughput imaging. All images, protocols, and subjects are in one location with inherent co-registration, image fusion, data processing, and analysis.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Web application to search for academic articles and research papers from various sources such as arXiv, medRxiv, bioRxiv, PMC, and Google PDF search. Provides user friendly interface to discover articles and access them for free. Provides direct links to original sources, allowing users to access full articles.

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• RRID
• 2 years ago - by Anonymous

Software as comprehensive and modular pipeline for integrated multi-omics analyses of microbiomes. Enables integration of taxonomic and functional analyses in microbiome multi-omics data.

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• RRID
• 2 years ago - submitted by Muzaffer Arikan

Database is crowdsourced effort to include unpublished and published replication results to estimate and track replicability along various fields and provide researchers with way to assess replicability of crucial studies in quick and transparent way.

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• RRID
• 2 years ago - submitted by Anita Bandrowski

Software graphical image annotation tool written in Python. Image polygonal annotation with Python (polygon, rectangle, circle, line, point and image-level flag annotation).

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• RRID
• 2 years ago - by Anonymous

Automated cell analyzer, which can characterize cell properties using fluorescence imaging. Offers optimized protocols to meet needs of all mammalian cell types grown under different conditions. Cell count can be performed even on cells growing on microcarriers and in sphere cultures. Performs high-speed cell count and viability determination and offers unique 5-minute Cell Cycle Assay and 1-minute Apoptosis Assay for up to eight samples at the time. The intuitive software has unlimited licenses and produces on-screen data analysis and automated PDF reports., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• RRID
• 2 years ago - by Anonymous

Software tool that helps users write experimental protocols.

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• RRID
• 2 years ago - submitted by Anita Bandrowski

Software tool that compares snippets of methods sections from PubMed Central, open access subset to other snippets of methods sections.

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• RRID
• 2 years ago - submitted by Anita Bandrowski

Plate reader for analyzing Enzymatic and fluorescent based EliSpot assays. Besides functionality of AID Classic, AID iSpot allows to analyze 1-, 2- or 3-color FluoroSpot assays. Provides one-click switch between enzymatic and fluorescent mode, without the need of hardware changes. The “FluoroAID” image overlay technology permits exact detection of cells secreting multiple cytokines. Count results and all other parameters can be exported in various formats.

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• RRID
• 2 years ago - by Anonymous

Web application for flow cytometry analysis. Used to analyze FCS files for free in web-based app. Supports most FCS file types including FCS2.0, FCS3.0, and FCS3.1. Provides collection of flow cytometry tools which can also be used for analysis.

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• RRID
• 2 years ago - submitted by Maria del Mar Ortega-villaizan

Cell analyzer system can be configured with up to 5 lasers to detect up to 20 parameters simultaneously. BD FACSDiva Software controls the setup, acquisition and analysis of flow cytometry data from the BD LSRFortessa Workstation.

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• RRID
• 2 years ago - by Anonymous

Software for calculation of radiomic features for medical images. Enables calculation of conventional, histogram based, textural, and shape features from PET, SPECT, MR, CT, and US images, or from any combination of imaging modalities. Dedicated to researchers, radiologists, nuclear medicine physicians and oncologists to give access to 306 histogram, textural and shape indices in addition to conventional indices and where users can change calculation options.

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• RRID
• 2 years ago - by Anonymous

Software package for automatic extraction of optimal co-expressed gene clusters from gene expression data. Automatic and optimised consensus clustering of one or more heterogeneous datasets.

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• RRID
• 2 years ago - by Anonymous

Operating software for Thermo Scientific NanoDrop 1000 Spectrophotometer. Free NanoDrop operating software to update your instrument.

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• RRID
• 2 years ago - submitted by Brianna Miller

Monochromator based microplate reader combines performance of Molecular Devices SpectraMax M5e MultiMode Microplate Reader with integrated 8-channel or 16-channel pipettor into one compact benchtop reader. System provides multi-detection platform capable of increasing liquid handling throughput and flexibility for biochemical-based and cellbased assays.

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• 2 years ago - submitted by Brianna Miller

Software cloud based data analysis platform developed by Metrichor Ltd for Oxford Nanopore Technologies. Suite of data analysis workflows for wide range of applications.

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• 2 years ago - submitted by anita bandrowski

Software metadata and text extraction and text manipulation tool set for statistical programming language R. Facilitates text mining projects on scientific articles in 'NISO-JATS' format by enabling individual selection of metadata and text parts.

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• RRID
• 2 years ago - by Anonymous

OMIQ is a modern cytometry analysis platform bridging machine learning and analytical pipelines with classical manual analysis. SaaS solutions for high dimensional flow cytometry and quantitative multi-omics data.

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• RRID
• 2 years ago - by Anonymous

Core for genomics research in Carl R. Woese Institute for Genomic Biology. Coordinates with IGB and National Center for Supercomputing Applications to provide technical expertise in high-performance computational biology.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth