Curator Dashboard

Provides bioinformatics support for translational genomics using sequencing, arrays, single cell, and other technologies.

• Resource
• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Provides statistical and computational methods for design, execution, analysis, and reporting of cancer-related research studies and trials including biomarker analysis and grant development.

• Resource
• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Light microscopy core facility at Newcastle University based in the Faculty of Medical Sciences, providing services, access, training and support for light microscopy.

• Resource
• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Software tool for single cell WGS analysis. Used to accurately detect single base substitutions, insertions-deletions (indels), and structural variants in PTA-based WGS data.

• Resource
• RRID
• 2 years ago - submitted by Vera Poort

SeqStudio Genetic Analyzer is fluorescent dye labeled genetic analysis system using capillary electrophoresis technology. Enables both sequencing and fragment analysis applications without the need to switch polymer type or capillary array length. Allows to perform both sequencing and fragment analysis in single run.

• Resource
• RRID
• 2 years ago - by Anonymous

Software tool to detect phenotypically relevant drug targets through unique transcriptomic enrichment that emphasizes biological directionality of drug-derived gene sets. Exploratory tool to screen for possible drug targeting molecules.

• Resource
• RRID
• 2 years ago - by Anonymous

Software error correction and de-novo assembly tool for Nanopore long noisy reads. Nanopore data assembler.

• Resource
• SciCrunch
• 2 years ago - by Anonymous

Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats.

• Resource
• SciCrunch
• 2 years ago - by Anonymous

Software R package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree. Helps users choose parameters to reflect age information for prior age distributions, visualise time priors, and produce output files ready to be used in MCMCtree. Used to prepare MCMCtree analyses and visualize posterior ages on trees.

• Resource
• SciCrunch
• 2 years ago - by Anonymous

Web analysis tool for validating predictive biomarkers of chemotherapy/hormonal therapy/anti-HER2 therapy using transcriptomic data of breast cancer patients. Designed to validate and rank new predictive biomarker candidates in real time. Platform provides resource for researchers to mine database and to validate and rank future biomarker candidates.

• Resource
• RRID
• 2 years ago - submitted by Susan Kasper

Software tool for discovery of novel immune systems in prokaryotes. Automatic annotation and classification of immune systems in prokaryotes using Deep Learning.

• Resource
• RRID
• 2 years ago - submitted by Sven Hauns

Web tool for determining HLA locus and allele disequilibria by population ethnicity.

• Resource
• RRID
• 2 years ago - submitted by Steven Heron

mathematical derivation for demonstrating the limitations of the number of spheres (inferring lymphocytes, particularly T and B cell interactions) that can interact simultaneously

• Resource
• RRID
• 2 years ago - submitted by Steven Heron

Software for processing single-molecule and diffraction limited polarisation camera images.

• Resource
• RRID
• 2 years ago - by Anonymous

Software for live processing of polarisation camera images.

• Resource
• RRID
• 2 years ago - by Anonymous

Software napari plugin to process and render polarisation camera data. Used for polarisation camera image processing.

• Resource
• RRID
• 2 years ago - by Anonymous

Software for processing single-molecule and diffraction limited polarisation camera image data using dipole PSF fitting. MATLAB scripts and utilities for analysis of simulated and experimental POLCAM single-molecule orientation-localisation microscopy (SMOLM) data using RoSE-O, providing accurate and precise measurements of location and orientation of single molecules.

• Resource
• RRID
• 2 years ago - by Anonymous

Software for performing pixelwise calibration of sCMOS cameras. MATLAB code and instructions for routine camera calibration.

• Resource
• RRID
• 2 years ago - by Anonymous

cat # 130-048-701 Miltenyi Anti-FITC MicroBeads are widely used for indirect magnetic labeling and separation of cells or other materials which are labeled with a primary antibody or ligand conjugated to fluorescein isothiocyanate (FITC).

• Resource
• RRID
• 2 years ago - submitted by alice Talpin

Catalog number: S11223 ThermoFisherScientific https://www.thermofisher.com/order/catalog/product/fr/en/S11223

• Resource
• RRID
• 2 years ago - submitted by alice Talpin