Curator Dashboard

X-Ray Diffraction Facility located in Chemistry Instrumentation Center is equipped with Bruker X8 Prospector Ultra with Copper ImuS micro-focus X-ray source and Bruker D8 Venture Dual source (Molybdenum and Copper micro-focus X-ray tubes) diffractometer with Photon III CPAD detector. Data can be collected at nitrogen-cooled temperatures as low as 90K. Core provides sample submission services for small molecule crystalography.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core supports fabrication and characterization of nanoscale materials and structures, and integration of devices at all length scales. Houses advanced equipment with core nano-level capability for fabrication and characterization, including electron-beam lithography system, dual-beam system, plasma etching, thin film deposition, TEM, multifunctional scanning probe station, modular XRD, and more.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core provides mass spectrometry instruments including Bruker Daltonics UltrafleXtreme MALDI TOF-TOF, Shimadzu Instrument LCMS-2020,Shimadzu Instrument QP2010S GCMS,Thermo Fisher Oribtrap Exploris 240,Thermo Scientific Q-Exactive Oribtrap for determining masses of particles, and elemental composition of sample or molecule.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Collection of in situ hybridization data of gene expression in the brain of adult fish. Data can be viewed and downloaded.

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• RRID
• 2 years ago - by Anonymous

Web Java application for visualizing and analyzing trends and patterns in scientific literature. Provides various functions to facilitate understanding and interpretation of network patterns and historical patterns,finding citation hotspots, decomposing network into clusters, automatic labeling clusters with terms from citing articles, geospatial patterns of collaboration, and unique areas of international collaboration. Supports structural and temporal analyses of networks derived from scientific publications, including collaboration networks, author co-citation networks, and document co-citation networks. Supports networks of hybrid node types such as terms, institutions, and countries, and hybrid link types such as co-citation, co-occurrence, and directed citing links.

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• RRID
• 2 years ago - by Anonymous

Software tool for extracting low-allele-frequency tumor mutations from sequencing background noise in clinical practice. Detects variations, specifically low allele frequency variation, in next generation sequencing data.

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• RRID
• 2 years ago - by Anonymous

Web based database to search human and mouse housekeeping and candidate reference genes/transcripts. It also offers tissue and cell selective candidate reference transcripts and some primers for quantitative PCR normalization.

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• RRID
• 2 years ago - by Anonymous

Software suite of business analytics tools to connect to all sorts of data and create visuals and reports. Interactive data visualization and reporting platform developed by Microsoft. Part of Microsoft Power Platform.

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• RRID
• 2 years ago - submitted by Anushka Sheoran

Software library and tool for accessing remote BLOW5 files. Used for fetching reads from remote BLOW5 files.

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• RRID
• 2 years ago - submitted by Bonson Wong

Software R package models, plans, and schedules flexible, such as agile, extreme, and hybrid project plans. The package contains project planning, scheduling, and risk assessment functions.

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• RRID
• 2 years ago - submitted by Kosztyán Zsolt Tibor

A command line tool and a library and for fetching reads from remote BLOW5 files.

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• RRID
• 2 years ago - submitted by Bonson Wong

System used for small animal brain surgery. Allows to create neurotrauma model with unprecedented degree of reproducibility of the direction of impact and position of the injury. Controlled impact injury device. Device used for traumatic brain injury induction.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Core specializes in electrical design, fabrication, and repair of research equipment and instrumentation.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Unites all Delft University of Technology research in the field of robotics. Its main challenge is to get robots and humans to work together effectively in unstructured environments, and real settings. Institute takes a leading role in the creation of the next generation robots.

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• RRID
• 2 years ago - submitted by Edyta Vieth

Image capture brightfield whole slide scanner for low throughput with five slide capacity and 20X and 40x magnification capabilities. 2x3 slide option available for large slides. Aperio CS2 runs on Microsoft Windows 10 operating system.

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• SciCrunch
• 2 years ago - submitted by Martha Campbell-Thompson

Core offers single cell sequencing. Provides analysis of transcriptomics, proteomics and epigenomics at single cell level. Provides comprehensive approach for cell characterization and gene expression profiling. Services include single cell gene expression, immune profiling, ATAC, and multiome analysis.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Core Facility with conventional, full-spectrum, cell sorting and flow cytometry services. Training provided by core personnel.

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• SciCrunch
• 2 years ago - submitted by Edyta Vieth

Database containing detailed information about small molecules produced by human microbiome. Provides metabolite data including structure, names, descriptions, chemical taxonomy, chemical ontology, physico-chemical data, spectra and contains detailed information about microbes that produce these chemicals, enzymatic reactions responsible for their production, bioactivity of chemicals and anatomical location of these chemicals and microbes. Many data fields in the database are hyperlinked to other databases including FooDB, HMDB, KEGG, PubChem, MetaCyc, ChEBI, UniProt, and GenBank. Database is FAIR compliant.The data in MiMeDB are released under the Creative Commons (CC) 4.0 License.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Open access knowledge base for microbial natural products discovery. Database of microbially derived natural product structures. Provides coverage of bacterial and fungal natural products to visualize chemical diversity. Includes compounds and contains referenced data for structure, compound names, source organisms, isolation references, total syntheses, and instances of structural reassignment. Interactive web portal permits searching by structure, substructure, and physical properties. Provides mechanisms for visualizing natural products chemical space and dashboards for displaying author and discovery timeline data. Atlas has been developed under FAIR principles.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin

Software application for universal searching of Mass Spectrometry data. Open source MS query language for flexible and mass spectrometer manufacturer-independent mining of MS data. Implements common MS terminology to build consensus vocabulary to search for MS patterns in single mass spectrometry run. Enables set of mass spectrometry patterns to be queried directly from raw data.

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• dkNET
• 2 years ago - submitted by Ko-Wei Lin