Curator Dashboard

Software tool as long-read mapping algorithm optimized for mapping ONT and PacBio reads to repetitive reference sequences. Winnowmap2 computes each read mapping through collection of confident subalignments. This approach is more tolerant of structural variation and more sensitive to paralog-specific variants within repeats.

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• SciCrunch
• 2 years ago - by Anonymous

Software R package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree. Helps users choose parameters to reflect age information for prior age distributions, visualise time priors, and produce output files ready to be used in MCMCtree. Used to prepare MCMCtree analyses and visualize posterior ages on trees.

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• SciCrunch
• 2 years ago - by Anonymous

Web analysis tool for validating predictive biomarkers of chemotherapy/hormonal therapy/anti-HER2 therapy using transcriptomic data of breast cancer patients. Designed to validate and rank new predictive biomarker candidates in real time. Platform provides resource for researchers to mine database and to validate and rank future biomarker candidates.

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• RRID
• 2 years ago - submitted by Susan Kasper

Software tool for discovery of novel immune systems in prokaryotes. Automatic annotation and classification of immune systems in prokaryotes using Deep Learning.

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• RRID
• 2 years ago - submitted by Sven Hauns

Web tool for determining HLA locus and allele disequilibria by population ethnicity.

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• RRID
• 2 years ago - submitted by Steven Heron

mathematical derivation for demonstrating the limitations of the number of spheres (inferring lymphocytes, particularly T and B cell interactions) that can interact simultaneously

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• RRID
• 2 years ago - submitted by Steven Heron

Software for processing single-molecule and diffraction limited polarisation camera images.

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• RRID
• 2 years ago - by Anonymous

Software for live processing of polarisation camera images.

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• RRID
• 2 years ago - by Anonymous

Software napari plugin to process and render polarisation camera data. Used for polarisation camera image processing.

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• RRID
• 2 years ago - by Anonymous

Software for processing single-molecule and diffraction limited polarisation camera image data using dipole PSF fitting. MATLAB scripts and utilities for analysis of simulated and experimental POLCAM single-molecule orientation-localisation microscopy (SMOLM) data using RoSE-O, providing accurate and precise measurements of location and orientation of single molecules.

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• RRID
• 2 years ago - by Anonymous

Software for performing pixelwise calibration of sCMOS cameras. MATLAB code and instructions for routine camera calibration.

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• RRID
• 2 years ago - by Anonymous

cat # 130-048-701 Miltenyi Anti-FITC MicroBeads are widely used for indirect magnetic labeling and separation of cells or other materials which are labeled with a primary antibody or ligand conjugated to fluorescein isothiocyanate (FITC).

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• RRID
• 2 years ago - submitted by alice Talpin

Catalog number: S11223 ThermoFisherScientific https://www.thermofisher.com/order/catalog/product/fr/en/S11223

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• RRID
• 2 years ago - submitted by alice Talpin

Sigma cat # HPA006361 Sigma-Aldrich Anti-B2M antibody produced in rabbit enhanced validation

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• RRID
• 2 years ago - submitted by alice Talpin

Catalog number: SA1005

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• RRID
• 2 years ago - submitted by alice Talpin

BD Horizon™ BV786 Streptavidin is a useful second-step reagent for the indirect immunofluorescent staining of cells in combination with biotinylated primary antibodies for flow cytometric analysis.

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• RRID
• 2 years ago - submitted by alice Talpin

cat # 405204 (Biolegend) Streptavidin binds to biotin with high affinity. Streptavidin-Phycoerythrin (PE) is useful for detecting biotinylated antibodies. The excitation of PE by 488 nm laser light induces a light emission maximum of 575 nm.

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• RRID
• 2 years ago - submitted by alice Talpin

Catalog number: SA10041 Invitrogen 1 mg/mL R-phycoerythrin

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• RRID
• 2 years ago - submitted by alice Talpin

Optima XE generates centrifugal forces for separation of particles. Classified S, it can be used with all currently manufactured Beckman Coulter preparative rotors. Uses diffusion pump in series with mechanical vacuum pump to reduce chamber pressure to very low level. Uses solid state thermoelectric refrigeration and heating system without coolant or water. Cooling is provided by forced air from the fans.

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• RRID
• 2 years ago - by Anonymous

Open source device for fluid tracking in socially housed rats. Device uses RFID and custom hardware to individually measure and record each rat's fluid consumption and licking microstructure.

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• RRID
• 2 years ago - submitted by Kevin Chavez Lopez