Curator Dashboard

Facility has NMR spectrometers used to execute experiments typically used for structure elucidation and dynamics characterization of both small and large (ie. protein) molecules in solution. All spectrometers are connected to the internet. Data can be readily transferred for remote processing and the campus has a site license for Mestrenova NMR data processing and visualization software. Assistance is available for all who wish to use NMR spectroscopy. Advice on all aspects of solution NMR spectroscopy is available from the facility manager.

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• 2 years ago - submitted by Phillip Deyerle

Software that can handle NMR and MS data and combines both technologies for even deeper insights and more comprehensive analysis.

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• 2 years ago - by Anonymous

Desktop app that provides no-code user interface for converting neurophysiology data to Neurodata Without Borders.

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• 2 years ago - submitted by Maryann Martone

Browser-based tool designed for visualization of Neurodata Without Borders files, whether stored locally or hosted remotely, and enables interactive exploration of DANDI Archive.

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• 2 years ago - submitted by Maryann Martone

Software Python-based package designed to asses quality of Neurodata Without Borders files and based on compliance with Best Practice. Meant as companion to PyNWB validator, which checks for strict schema compliance. Attempts to apply some commonsense rules and heuristics to find data components of file that pass validation, but are probably incorrect, or suboptimal, or deviate from best practices. In other words, while PyNWB validator focuses on compliance of structure of file with the schema, the inspector focuses on compliance of actual data with best practices. Meant as data review aid. It does not catch all best practice violations, and any warnings it does produce should be checked by knowledgeable reviewer.

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• dkNET
• 2 years ago - submitted by Maryann Martone

Universal framework for describing behavioral tasks. Language to abstract and standardize behavioral task descriptions on two layers. Graphical layer specifies elements to describe behavioral tasks as state machine in formal flow diagram and how task controlling system interacts with subject. This graphical layer has been designed to be easy to understand while retaining all aspects of behavioral task. The second layer is corresponding, XML-based description of task. This layer forms rigid, yet extensible foundation of BEADL and hides hardware implementation related details form graphical representation.BEADL-specific extension for Neurodata Without Borders data standard defines how behavioral outcomes of task are stored in NWB including corresponding BEADL task description.

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• dkNET
• 2 years ago - submitted by Maryann Martone

Instrument that runs Biolog's microplate metabolic arrays. Incubates and monitors 50 microplates, or 1,920 phenotypic assays simultaneously to measure physiological responses in diverse microbial cells. OmniLog PM system includes software for analysis of Biolog Phenotype MicroArray panels.

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• 2 years ago - by Anonymous

Automated cell counter accurately counts cells in one simple step using auto-focus technology and cell-counting algorithm. Enables accurate cell counting in less than 30 seconds.

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• 2 years ago - by Anonymous

Provides digital infrastructure, data analytics and decision support tools to help in diagnosis, treatment and monitoring of patients.

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• 2 years ago - by Anonymous

Whole body magnetic resonance imaging scanner designed to support high resolution, high signal-to-noise ratio and fast scan times. This MRI system features superconducting magnet that operates at 3. O Tesla.

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• 2 years ago - by Anonymous

Software R package for comprehensive identification of enriched pathways in omics data through active subnetworks. Uses protein interaction networks to find enriched pathways from transcriptomic data.

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• 2 years ago - by Anonymous

Project titled Program to Reveal and Evaluate Cells-to-gene Information that Specify Intricacies, Origins, and Nature of Human Pain (PRECISION) Network to develop meaningful resource for knowledge transfer, and to integrate and share Human Pain Associated Genes and Cell Datasets. Building knowledge platform to visualize, query, and interact with these data will support researchers and help accelerate dissemination of vital data to the larger scientific community. These goals align with NIH Helping to End Addiction Long-term (HEAL) Initiative, which seeks to accelerate the discovery and successful translation of non-addictive pain therapeutics. PRECISION Human Pain Network will leverage prior interdisciplinary collaboration to create workflows, tools, and infrastructure to define data and metadata types, to improve data management and sharing, and to integrate datasets and visualization tools.

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• 2 years ago - submitted by Anita Bandrowski

The Swiss Pathogens Portal was developed to support researchers by: - Providing a one-stop resource for all Swiss pathogen data and projects. - Fostering collaborations and synergies by creating a forum for discussion. - Providing documentation and training material on FAIR research data management, especially for pathogen omics data. - Showcasing Swiss resources that contribute to pathogen data sharing, access, analysis, and interpretation. Broken URL; letter sent

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• 2 years ago - submitted by Aitana Neves

Secure One-health online platform that enables near real-time sharing under controlled access of pathogen sequencing data and their associated clinical/epidemiological metadata. Data exchange platform for bacterial, viral and fungal genomics and associated metadata.

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• 2 years ago - submitted by Aitana Neves

PhysiCell add-on which allows users to simulate ECM components as agents. PhysiCell addon for extracellular matrix modelling.

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• 2 years ago - submitted by Vincent Noël

Software package provides implementation of inference pipeline of AlphaFold v2. Incorporates physical and biological knowledge about protein structure, leveraging multi-sequence alignments, into design of deep learning algorithm. Used for protein structure prediction.

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• 2 years ago - by Anonymous

Software application offers accelerated prediction of protein structures and complexes by combining homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. Used for protein folding.

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• 2 years ago - by Anonymous

Global resource for cancer epidemiology. Presents national estimates of incidence, mortality and rate. Enables comprehensive assessment of cancer burden worldwide in 2022, based on GLOBOCAN estimates of incidence, mortality and prevalence for year 2022 in 185 countries or territories for 36 cancer types by sex and age group. Provides data visualization tools for exploring global cancer burden in 2022.

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• 2 years ago - by Anonymous

Interactive web-based platform presenting global cancer statistics to inform cancer control and cancer research. Focuses on the visualization of cancer indicators using data from IARC’s Cancer Surveillance Branch (CSU), including GLOBOCAN;Cancer Incidence in Five Continents (CI5); International Incidence of Childhood Cancer (IICC); and several cancer survival benchmarking projects (SurvCan and SURVMARK).

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• 2 years ago - by Anonymous

Core supports the application of cryo-EM in making new scientific discoveries. Provides access and training in the use of cutting edge cryo-EM technology and techniques for the characterization of biological samples from the cellular to the atomic scale.

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• 2 years ago - by Anonymous