Curator Dashboard

Software that provides visualization tools for flow cytometry data.

• Resource
• SciCrunch
• 12 years ago - by Anonymous

Software package for a DNA assembly program designed for de novo assembly of 25-40mer input fragments and deep sequence coverage.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Open source software interactive, scalable, visualization, animation and analysis tool. Used to generate visualizations, animate them through time, manipulate them with variety of operators and mathematical expressions, and save resulting images and animations for presentations.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

A fully automated R Bioconductor package to calculate automatically the detector efficiency (Q), optical background (B) and intrinsic CV of the beads.

• Resource
• SciCrunch
• 12 years ago - by Anonymous

Open source software for a Laboratory Information Management System (LIMS) for NGS sequencing centres.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Software tool to process raw sequenceing chromatograph trace files from EST projects into quality checked sequences, ready for submission to dbEST.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Virtual database of individual data sources, maintained by SciCrunch participating groups. Database topics are varied, including animals, grants, software, brain gene expression, and clinical trials.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Software for empirical gramians for model reduction of (nonlinear) input-output systems.

• Resource
• SciCrunch
• 10 years ago - submitted by Christian Himpe

Software MATLAB toolbox which implements multiple algorithms for independent component analysis and blind source separation of group and single subject functional magnetic resonance imaging data.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

Portal for studies of genome structure and genetic variation, gene expression and gene function. Provides services including DNA sequencing of model and non-model genomes using both Next Generation and Sanger sequencing , Gene expression analysis using both microarrays and Next Generation Sequencing, High throughput genotyping of SNP and copy number variants, Data collection and analysis supported in-house high performance computing facilities and expertise, Extensive EST clone collections for a number of animal species, all of commercially available microarray tools from Affymetrix, Illumina, Agilent and Nimblegen, Parentage testing using microsatellites and smaller SNP panels. ARK-Genomics has developed network of researchers whom they support through each stage of their genomics research, from grant application, experimental design and technology selection, performing wet laboratory protocols, through to analysis of data often in conjunction with commercial partners.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on October 27,2023. Core that provides services for performing specific morphological procedures, providing training and access to equipment, maintaining the specialized microscopes, and giving advice and interpretation.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Portal that aggregates tools that assist users ascertain FAIR-ness. Offers guidance to discover standards and repositories in FAIRsharing, which should be used to make data FAIR, as well as signpost other resources that enable FAIRness.

• Resource
• RRID
• 3 years ago - submitted by Anita Bandrowski

Data set of pictures representing genetic linkage maps of the rat resulting from the integration of two F2 intercrosses (SHRSP x BN and FHH x ACI). Markers in common between the two crosses are connected by a line to define integration points. There are a total of 4,786 markers on these maps; 4375 WIBR/MIT CGR markers; 223 markers from the previously released Mit/Mgh rat maps and 188 markers from the National Institute of Arthritis and Musculoskeletal and Skin Diseases Arb rat maps. Pictures are drawn to a scale of 5cm (Kosombi) per inch. The changes in color of the backbone of the chromosome for each cross represents the space between any two framework loci. Markers in blue type are framework loci. Markers in green type are unique placement loci. Markers in black type are bouncy placement loci.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Program and partnership for supporting the California Diabetes Program. This partnership engages in various supportive activtes, including diabetes surveillance; the design, implementation, and evaluation of prevention and care strategies for diabetes; understanding the implications of policy change on diabetes care and prevention; and dissemination of new findings to diabetes stakeholders throughout the state.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen

Software free desktop Windows application for the management and analysis of microbiology laboratory data with a particular focus on antimicrobial resistance surveillance developed and supported by the WHO Collaborating Centre for Surveillance of Antimicrobial Resistance at the Brigham and Women's Hospital in Boston, Massachusetts. WHONET, available in 44 languages, supports local, national, regional, and global surveillance efforts in over 2,300 hospital, public health, animal health, and food laboratories in over 130 countries worldwide.

• Resource
• SciCrunch
• 3 years ago - submitted by Edyta Vieth

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on July 27,2023. Group providing a standard for the representation of microarray expression data that would facilitate the exchange of microarray information between different data systems.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Data standard for neurophysiology, providing common standard to share, archive, use, and build common analysis tools for neurophysiology data. NWB:N is designed to store variety of neurophysiology data, including data from intracellular and extracellular electrophysiology experiments, data from optical physiology experiments, and tracking and stimulus data. Project includes NWB format and broad range of software for data standardization and application programming interfaces (APIs) for reading and writing data as well as high value data sets that have been translated into NWB data standard. NWB format is implemented in Hierarchical Data Format (HDF5) and is designed to store data in self documenting way. Storage schema is described by specification language and it is extensible to support future scientific needs as well as lab specific requirements.

• Resource
• NIF
• 10 years ago - submitted by Maryann Martone

Facility is shared resource laboratory providing comprehensive suite of services to support research needs in flow cytometry. Offers conventional and full spectral cytometry for multi-parametric analysis, as well as multiparameter fluorescence activated cell sorting.

• Resource
• RRID
• 3 years ago - by Anonymous

An independent, non-governmental organization made up of members from the national standards bodies of 161 countries that develop and publish International Standards covering almost all aspects of technology and business. From food safety to computers, and agriculture to healthcare, ISO International Standards impact all our lives. The Central Secretariat in Geneva, Switzerland, coordinates the system. The standards are developed by the people that need them, through a consensus process. Experts from all over the world develop the standards that are required by their sector. This means they reflect a wealth of international experience and knowledge.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Center for research in polycystic kidney disease (PKD) with collaboration by international investigators. The center has several cores, including biomedical cores for antibody validation and cell cultures, educationa programs, and pilot programs for new projects.

• Resource
• SciCrunch
• 10 years ago - submitted by Kristen Jensen