Curator Dashboard

Core provides access, training and service scans for a range of state-of-the-art pre-clinical imaging modalities and high-resolution NMR spectroscopy for anatomy, function, and metabolism. Modalities include bioluminescence, fluorescence, ultrasound, MRI, PET, SPECT and CT, photoacoustic imaging, and image-guided X-ray irradiation. 

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• 2 months ago - submitted by Nadia Cross

Software R package for the analysis of kinetic phenotypic screens read as growth curves in 96-well microplates. Implements a benchmarked, simulation-validated pipeline that goes from raw OD600 trajectories to a hit list: plate-level quality control (control CV, Z'-factor, SSMD), within-plate positional correction by median polish (B-score), normalisation to the median of in-plate controls, and hit calling requiring convergence between per-plate ANOVA and a library-wide linear mixed model with Benjamini-Hochberg FDR control. Also extracts kinetic parameters (maximum specific growth rate, maximum OD, lag time) and supports functional principal component analysis and Monte Carlo validation of pipeline operating characteristics.

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• 2 months ago - submitted by Marcos Parras

Software R package to integrate and query microRNA (miRNA) data. It allows retrieve and analyze validated and predicted miRNA-target interactions, as well as their associations with various diseases and drugs.

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• 2 months ago - submitted by Kemal Ugur Tufekci

Software repository that contains curated cross‑reference dataset that links official ICTV virus taxa to their corresponding NCBI Taxonomy identifiers using the SSSOM (Simple Standard for Sharing Ontology Mappings) format. It provides machine‑readable, standardized mappings that enable interoperability between the ICTV taxonomy and widely used NCBI Taxonomy resources.

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• 2 months ago - by Anonymous

Structured, machine‑readable interface that exposes the complete ICTV virus taxonomy as an OWL/RDF ontology. It provides programmatic access to official virus taxa, their hierarchical relationships, synonyms, historical names, and metadata, enabling automated reasoning, name resolution, and integration of ICTV taxonomy into bioinformatics tools and databases.

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• 2 months ago - by Anonymous

Web tool that uses the ICTV Ontology API to translate any virus name—current, historical, informal, or deprecated—into its official, up‑to‑date taxonomic position within the ICTV (International Committee on Taxonomy of Viruses) taxonomy, the globally recognized standard for virus classification.

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• 2 months ago - by Anonymous

Multidisciplinary public university with eight faculties located in the city of Turku in southwestern Finland. The university also has campuses in Rauma and Pori and research stations in Kevo and Själö.

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• 2 months ago - submitted by Edyta Vieth

Software tool to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes. ImageJ-plugin that is optimized to perform standard analysis of colony formation assays conducted in 6- to 24-well dishes. The plugin processes each well individually and determines not the colony number, but the area of the well covered with cells, also taking the intensity into account.

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• 2 months ago - by Anonymous

Software R package offers a panel of functions for kinase activity inference on an input phosphoproteomics dataset using the Kinase-Substrate Enrichment Analysis (KSEA) method originally described by Casado et al.

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• 2 months ago - by Anonymous

Automated platform used in behavioral neuroscience to track and analyze the movements and behaviors of lab animals, such as mice and rats. Standardizes experiments like the Elevated Plus Maze, Open Field, Barnes Maze, and Fear Conditioning. Tracks whole-body movement, distance traveled, freezing/immobility, and zone entries. Connects to external devices like food dispensers, shockers, and lasers to trigger automated responses based on the animal's actions.

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• 2 months ago - by Anonymous

Norway's largest medical institution and Scandinavia’s largest hospital, employing over 20,000 people and serving around 2.7 million residents. Affiliated with the University of Oslo, it combines local, regional, and national emergency services with pioneering biomedical research and education.

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• 2 months ago - submitted by Edyta Vieth

Core provides services, including sample analysis and cell sorting, as well as instrumentation, software, and technical expertise/advice for a variety of flow cytometric protocols. Training is available to enable users to run the cytometers themselves.

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• 2 months ago - by Anonymous

Core provides centralized administrative, operational, fiscal, regulatory, and communication support for the COBRE on Opioids and Overdose. Services include project management, pilot project administration, investigator support, grant and IRB assistance, meeting and event coordination, mentorship program administration, reporting, dissemination support, and coordination across COBRE cores and leadership.

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• 2 months ago - submitted by Edyta Vieth

Core provides fluorescence imaging services for HUN-REN BRC researchers, for collaborators from the SZTE and other Hungarian institutes, and for EuroBioImaging members. The available equipment consists of confocal laser scanning microscopes, fluorescence and stereo microscopes. Our expertise, image processing software collection and the available courses are supporting the efficient research.

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• 2 months ago - submitted by Edyta Vieth

Facility develops and characterizes clinically annotated patient-derived organoid and stromal cell models to support translational cancer research. Provides standardized model generation, comprehensive validation, experimental services, and investigator training to accelerate precision oncology studies

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• 2 months ago - submitted by Edyta Vieth

Core facility provides services including generation of new monoclonal antibodies , scaleup production , purification of antibody from existing cell lines and antibody conjugation.

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• 2 months ago - by Anonymous

Advanced confocal laser scanning microscope customized with an upright frame, specialized infrared lasers, and detectors. It allows researchers to look deep into thick, living tissues (intravital imaging) with exceptional clarity and minimal damage to the specimen.

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• 2 months ago - submitted by Jeffrey Caplan

Automated, all-in-one inverted microscope designed primarily for high-throughput live-cell imaging and 3D cell culture (like organoids). It combines the ease-of-use of an automated, boxed system with the advanced optics and flexibility of a classic research microscope.

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• 2 months ago - submitted by Jeffrey Caplan

Benchtop flow cytometer used to analyze and count individual cells or particles. Flow cytometer with 3 lasers (488, 405, 640 nm) and up 14 colors. 6 colors from violet laser; 5 colors from blue laser; 3 colors from red laser. NovoExpress software used for acquisition.

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• 2 months ago - by Anonymous

Biotech company headquartered in Castel Maggiore, Bologna, Italy, manufactures and markets health care technologies and products. Provides commercial molecular laboratory service for targeted next-generation sequencing library preparation, sequencing, and bioinformatic variant analysis of enriched circulating multiple myeloma cells, delivering an annotated report of somatic sequence and copy-number alterations.

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• 2 months ago - by Anonymous