Curator Dashboard

Core offers high-dimensional spectral cytometry, conventional flow cytometry, nano cytometry, imaging cytometry, spatial biology, and multi-omics (proteomics and transcriptomics). Provides Cytek Aurora spectral cytometers with up to 64-colour capability, CytoFLEX LX for multiparameter conventional cytometry, and CytoFLEX nano for ultra-sensitive detection of viruses, extracellular vesicles, and submicron particles,FlowCam 8400 imaging system for real-time visualisation and analysis of plankton, microbial communities, and other aquatic particulates.Other instruments include Amnis ImageStreamX MKII, MACSima Imaging Cytomics System.Provides services from immunotherapy development, precision oncology, and regenerative medicine to environmental monitoring, plant sciences, and nanoparticle characterisation. All services are underpinned by advanced AI-driven analytics, leveraging R, Python, TensorFlow, and PyTorch on high-performance computing platforms to integrate and interpret complex datasets.

• Resource
• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Public global Protein Data Bank archive of macromolecular structural data overseen by organizations that act as deposition, data processing and distribution centers for PDB data. Members are: RCSB PDB (USA), PDBe (Europe) and PDBj (Japan), and BMRB (USA). This site provides information about services provided by individual member organizations and about projects undertaken by wwPDB. Data available via websites of its member organizations.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II.

• Organization
• SciCrunch
• 16 years ago - submitted by Timothy Tsui

Software pipeline to process and analyse RNAseq data. Contains files needed to process and analyse RNAseq data.

• Resource
• RRID-Legacy
• 5 years ago - submitted by Mario de Bono

Collection of data related to crop plant and model organism Zea mays. Used to synthesize, display, and provide access to maize genomics and genetics data, prioritizing mutant and phenotype data and tools, structural and genetic map sets, and gene models and to provide support services to the community of maize researchers. Data stored at MaizeGDB was inherited from the MaizeDB and ZmDB projects. Sequence data are from GenBank. Data are searchable by phenotype, traits, Pests, Gel Pattern, and Mutant Images.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

University in Durham, England.

• Organization
• SciCrunch
• 9 years ago - submitted by Isabella Froman

The AIME methodology is detailed in the paper available at The AIME methodology is detailed in the paper available at https://ieeexplore.ieee.org/document/10247033. AIME is proposed to address the challenges faced by existing methods in providing intuitive explanations for black-box models. AIME offers unified global and local feature importance by deriving approximate inverse operators for black-box models. It introduces a representative instance similarity distribution plot, aiding comprehension of the predictive behavior of the model and target dataset. This software only supports the global feature importance of AIME.

• Resource
• RRID
• 1 year ago - submitted by Takafumi Nakanishi

The Influenza Research Database (IRD) serves as a public repository and analysis platform for flu sequence, experiment, surveillance and related data.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Public state university in West Bengal, India. There is a focus on interdisciplinary learning and research; the university features a variety of centers such as school of education technology, cognitive sciences, and natural product studies.

• Organization
• SciCrunch
• 13 years ago - submitted by Andrea Stagg

A locus-specific database aimed at collecting known mutations and non-pathogenic coding variations in the genes related to Alzheimer disease (AD) and frontotemporal dementia (FTD), following the guidelines of the Human Genome Variation Society. Mutations can be retrieved based on the gene, phenotype and publication. The database contains mutations reported in the literature and at scientific meetings, and unpublished mutations directly submitted to the database. To date, AD&FTDMDB contains mutations in the genes encoding the Amyloid Beta Precursor Protein (APP), Presenilin 1 (PSEN1), Presenilin 2 (PSEN2), Chromatin Modifying Protein 2B (CHMP2B), fusion (involved in t(12;16) in malignant liposarcoma) (FUS), Granulin (GRN), Microtubule Associated Protein Tau (MAPT), TAR DNA binding protein (TARDBP) and Valosin-containing Protein (VCP) and holds 415 different mutations observed in 1027 patients or families. As of March 2013, the latest publications referenced were from 2008, indicating that this resource may not be up to date.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

A method for using massively parallel paired-end transcriptome sequencing for ''alternative expression analysis''.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Public research university in Pocatello, Idaho. Founded in 1901 as the Academy of Idaho, ISU offers more than 280 programs at its main campus and at locations in Meridian, Idaho Falls, and Twin Falls. It is the state's designated lead institution in health professions and medical education.

• Organization
• SciCrunch
• 16 years ago - submitted by Andrea Stagg

Online repository for chicken in situ hybridization information. This site presents whole mount in situ hybridization images and corresponding probe and genomic information for genes expressed in chicken embryos in Hamburger Hamilton stages 1-25 (0.5-5 days). The GEISHA project began in 1998 to investigate using high throughput whole mount in situ hybridization to identify novel, differentially expressed genes in chicken embryos. An initial expression screen of approximately 900 genes demonstrated feasibility of the approach, and also highlighted the need for a centralized repository of in situ hybridization expression data. Objectives: The goals of the GEISHA project are to obtain whole mount in situ hybridization expression information for all differentially expressed genes in the chicken embryo between HH stages 1-25, to integrate expression data with the chicken genome browsers, and to offer this information through a user-friendly graphical user interface. In situ hybridization images are obtained from three sources: 1. In house high throughput in situ hybridization screening: cDNAs obtained from several embryonic cDNA libraries or from EST repositories are screened for expression using high throughput in situ hybridization approaches. 2. Literature curation: Agreements with journals permit posting of published in situ hybridization images and related information on the GEISHA site. 3. Unpublished in situ hybridization information from other laboratories: laboratories generally publish only a small fraction of their in situ hybridization data. High quality images for which probe identity can be verified are welcome additions to GEISHA.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The Traumatic Brain Injury Model Systems National Data and Statistical Center (TBINDSC) located at Craig Hospital in Englewood, Colorado, is a central resource for researchers and data collectors within the Traumatic Brain Injury Model Systems (TBIMS) program. The primary purpose of the TBINDSC is to advance medical rehabilitation by increasing the rigor and efficiency of scientific efforts to longitudinally assess the experience of individuals with traumatic brain injury (TBI). The TBINDSC provides technical assistance, training, and methodological consultation to 16 TBIMS centers as they collect and analyze longitudinal data from people with TBI in their communities, and as they conduct research toward evidence-based TBI rehabilitation interventions. The project design includes * The first prospective, longitudinal multi-center study ever conducted which examines the course of recovery and outcomes following the delivery of a coordinated system of acute neurotrauma and inpatient rehabilitation. * Includes large scale follow-up to 20 years post-injury. Available from this site are links to the TBIMS Presentation and TBIMS Update, which has information about the individual model systems and descriptions of the injury and followup data that are being collected. 2007-2012 Project Priorities * Improved long-term outcomes of individuals with TBI by conducting 1-2 site-specific research projects to test innovative approaches that contribute to rehabilitation interventions and evaluating TBI outcomes in accordance with the focus areas identified in NIDRR''s Long-Range Plan. * Improved outcomes for individuals with TBI by participating in at least one collaborative research module project, which may range from pilot research to more extensive studies. * Continued assessment of long-term outcomes of TBI by enrolling at least 35 subjects per year into the longitudinal portion of the TBIMS database. * In carrying out research activities, each Center may select from the following research domains: Health and Function, Employment, Participation and Community Living, and Technology for Access and Function. In addition, each Center must: * Provide a multidisciplinary system of rehabilitation care specifically designed to meet the needs of individuals with TBI. The system must encompass a continuum of care, including emergency medical services, acute care services, acute medical rehabilitation services, and post-acute services; and * Coordinate with the NIDRR funded Model Systems Knowledge Translation Center to provide scientific results and information for dissemination to clinical and consumer audiences.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Public research university in Bloomsbury, Camden, and a constituent college of the University of London that specialises in public health and tropical medicine.

• Organization
• SciCrunch
• 17 years ago - submitted by Andrea Stagg

A database which provides ribosome related data services to the scientific community, including online data analysis, rRNA derived phylogenetic trees, and aligned and annotated rRNA sequences. It specifically contains information on quality-controlled, aligned and annotated bacterial and archaean 16S rRNA sequences, fungal 28S rRNA sequences, and a suite of analysis tools for the scientific community. Most of the RDP tools are now available as open source packages for users to incorporate in their local workflow.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

A structured controlled vocabulary of the development of Caenorhabditis elegans.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Private research university with its main campus in Macon, Georgia. Founded in 1833 as Mercer Institute and gaining university status in 1837.

• Organization
• SciCrunch
• 13 years ago - submitted by Eddy Kim

Archive of aggregated information about sequence variation and its relationship to human health. Provides reports of relationships among human variations and phenotypes along with supporting evidence. Submissions from clinical testing labs, research labs, locus-specific databases, expert panels and professional societies are welcome. Collects reports of variants found in patient samples, assertions made regarding their clinical significance, information about submitter, and other supporting data. Alleles described in submissions are mapped to reference sequences, and reported according to HGVS standard.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

Software R package to quickly scan reads and gather statistics on base and quality frequencies, read length, k-mers by position, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

• Resource
• SciCrunch
• 13 years ago - by Anonymous