Curator Dashboard

A software tool for comparative visualization of genomes. It is based in the GBrowse frameworks and integrates with the annotation features.

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• SciCrunch
• 13 years ago - by Anonymous

R software toolbox of functions for the analysis of data generated by Roche's 454 sequencing platform. Additional functions are included for quality assurance, annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. A pipeline for the detection of structural variants is provided.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 15,2025. R software program for identifying differentially spliced genes from two groups of RNA-seq samples. It reads the count file and outputs the differences in the relative abundance of the isoforms of each gene in the annotation., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

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• SciCrunch
• 13 years ago - by Anonymous

A base-calling algorithm for Illumina DNA sequencing.

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• SciCrunch
• 13 years ago - by Anonymous

Software package written in Perl and C++ that provides a computational pipeline for identifying gene fusions from RNA-seq data.

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• SciCrunch
• 13 years ago - by Anonymous

Commercial company that specializes in measurement science software, hardware and services. Their software products include a range of photogrammetric camera calibration, measurement and event logging software. Their hardware products include calibration cubes and underwater camera housings. Services include design, construction and calibration of vision measurement systems, software development and GIS consulting.

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• SciCrunch
• 17 years ago - by Anonymous

Software for memory-efficient genome assembly. It utilizes sparse k-mer.

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• SciCrunch
• 13 years ago - by Anonymous

An independent, Catholic university in Belgium. The institution is Dutch-speaking but also offers several English programs.

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• SciCrunch
• 15 years ago - submitted by Andrea Stagg

Biomedical technology research center that develops and integrates new proteomic technologies for collaborative and service studies, disseminating the new technologies and training scientists in their use.

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• SciCrunch
• 14 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 24,2023. Software application that calculates an exact stratified test for HWE for diallelic markers, such as single nucleotide polymorphisms (SNPs), and an exact test for homogeneity of Hardy Weinberg disequilbrium. In addition, exact tests for HWE are calculated for each stratum. (entry from Genetic Analysis Software)

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 15,2025. Wiki of resources useful for researchers and clinicians interested in global health. All McGill faculty, clinicians, researchers, staff and students are encouraged to use and add to these resources. If members of the research community would like to contribute to this resource, but are not a member of the McGill community, the McGill community is available for contact. An account will be created for users.

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• SciCrunch
• 16 years ago - by Anonymous

Commercial supplier of biomaterials such as antibodies, antigens, lysates, and various assay kits.

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• SciCrunch
• 14 years ago - by Anonymous

R software that detects enriched regions of ChIP-seq data sets jointly.

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• SciCrunch
• 13 years ago - by Anonymous

R package with tools that use probabilistic inference of ChIP-Seq. It follows an empirical Bayes mixture model approach.

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• SciCrunch
• 13 years ago - by Anonymous

A software package for analyzing ChIP-seq (Chromatin ImmunoPrecipitation on sequencing) data that finds enriched regions of arbitrary lengths and is therefore especially suited for analyzing ChIP-seq of histone marks or polymerase.

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• SciCrunch
• 13 years ago - by Anonymous

R package with tools for de novo motif discovery in large-scale genomic sequence data.

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• SciCrunch
• 13 years ago - by Anonymous

A fast parallel error correction tool for short reads.

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• SciCrunch
• 13 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on August 18,2025. The National B Virus Resource Center is located in the Viral Immunology Center of Georgia State Universitys Department of Biology. Their laboratory is studying viruses that directly affect the central nervous system of infected hosts. Current projects in the laboratory are focused on the molecular biology of human and nonhuman primate alphaherpesviruses and the diseases they cause, immune response characterization, antiviral strategies, including drug discovery and high-throughput drug screening within unique, high containment laboratory suites. They are also actively engaged in the study of unique reoviruses that have the capacity to infect the central nervous systems of non human primates, langur viruses, and a newly isolated mangaby herpesvirus. Alphaherpesviruses target the central nervous system of susceptible hosts, and subsequently establish latent infections generally without severely damaging the host. There may be an initial acute phase when the virus successfully replicates in peripheral tissue of the host. This replication, when it occurs, induces a series of specific immune functions that can serve as markers of infection. We use these markers to design, develop and implement diagnostic assays that will be useful during the management of clinical disease. Each herpesvirus coexists peacefully with the natural host in which it has co-evolved, but when the viruses for any reason find themselves no longer in the natural host, the usual host:parasite relationship may change dramatically. In some closely related hosts the virus can replicate and, in some cases, pathogenesis of the infection is radically more severe than that which occurs in the natural host. For example, this can be seen when New World monkeys are infected with humans herpesviruses, e.g., HSV-1 or HSV-2, or when humans are infected with B virus from a macaque, a member of the Old World monkey family. Their studies focus on the mechanisms by which virus kills the host and how that process can be circumvented with early identification, appropriate antiviral drugs, and in the future, effective vaccines. We continually screen the efficacy of existing as well as novel antiviral agents to inhibit the growth of viruses that can potentially cross into the human population, either through occupational exposure or through more subtle contact. Their laboratory provides a global resource funded by National Institutes of Healths National Center for Research Resources to assist in the identification of zoonotic disease transmissions and develop enhanced strategies to detect virus in macaques. They particularly focus on the transmission of B virus from Asian monkeys to humans who come in contact with them. Members of the genus Macaca include rhesus monkeys, cynomolgus macaques, snow macaques, as well as all other macaques. If the macaque is in the midst of the acute or recurrent infection with B, virus can be transmitted to people who handle these monkeys through cuts, scratches, splashes, bites, or even contaminated equipment or surfaces, i.e., fomites. To counter the effects of this virus, the NIH and Centers for Disease Control and Prevention have instituted a critical set of guidelines for institutions to follow in the event of exposures. Their laboratory provides immediate support to these cases to assist in the rapid diagnosis of B virus infections and to determine the efficacy of selected treatment. Lifetime patient monitoring is provided to identify possible reactivation disease and to better track this unique herpesvirus as it has begun its existence in the human populations. Sponsors: The viral immunology center is funded by National Institutes of Healths National Center for Research Resources.

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• SciCrunch
• 17 years ago - by Anonymous

Public research university based in Melbourne, Australia. The institution is divided into ten faculties, including art design and architecture, engineering, information technology, and medicine, nursing, and health sciences.

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• SciCrunch
• 17 years ago - submitted by Stephen Larson

Software which performs local and remote genome assembly by several assemblers based on an XML Template which can replace the large command lines required by most assemblers.

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• SciCrunch
• 13 years ago - by Anonymous