Curator Dashboard

Software Python library (Linux or Ubuntu only) for predicting cluster level Gene Ontology terms of plasmid encoded proteins.

• Resource
• RRID
• 1 year ago - submitted by Yongxin Ji

Company provides reagents for detecting membrane and intracellular proteins (Flow cytometry antibodies), secreted proteins (ELISA kits), cell glycolipid metabolic intermediates and inorganic salts (Metabolism Assays), and comprehensive assessments of cellular function and health (Cell Apoptosis Assay, Cell cycle Assay, Cell Proliferation /Cytotoxicity/Viability).

• Resource
• RRID
• 1 year ago - by Anonymous

Code generated for use in Python to create DNA probes for use in hybridisation chain reaction, which allows for spatial resolution of mRNA expression with fluorescently tagged hairpins that bind to DNA probes. Used to generate HCR-style Probe Pairs for mRNA visualization.

• Resource
• RRID
• 1 year ago - by Anonymous

Web application, a user friendly, point-and-click implementation of spatialGE R package. Contains collection of methods for visualization and spatial statistics analysis of tissue microenvironment and heterogeneity using spatial transcriptomics experiments. Used for user-friendly analysis of spatial transcriptomics data.

• Resource
• RRID
• 1 year ago - by Anonymous

Software R package for spatial analysis of spatial transcriptomics data. Used for visualization and analysis of spatially-resolved gene expression.

• Resource
• RRID
• 1 year ago - by Anonymous

Software graph convolutional network to integrate gene expression and histology to identify spatial domains and spatially variable genes. SpaGCN integrates information from gene.

• Resource
• RRID
• 1 year ago - by Anonymous

Software R package as unsupervised, reference-free approach to infer latent cell-type proportions and transcriptional profiles within multi-cellular spatially-resolved pixels from spatial transcriptomics datasets.

• Resource
• RRID
• 1 year ago - by Anonymous

Software R package for performing cell typing in SMI and other single cell data.

• Resource
• RRID
• 1 year ago - by Anonymous

Software somatic variant calling pipeline designed to detect low variant allele fraction clonal hematopoiesjsonsis variants.

• Resource
• RRID
• 1 year ago - by Anonymous

Popular general-purpose scripting language that is especially suited to web development.

• Resource
• RRID
• 1 year ago - by Anonymous

PHP web application framework for building modern, full-stack web applications. Provides features such as thorough dependency injection, expressive database abstraction layer, queues and scheduled jobs, unit and integration testing.

• Resource
• RRID
• 1 year ago - by Anonymous

Open source Relational Database Management System that enables users to store, manage, and retrieve structured data efficiently.

• Resource
• RRID
• 1 year ago - by Anonymous

Web client/server system that allows its users to control number of processes on UNIX-like operating systems.

• Resource
• RRID
• 1 year ago - by Anonymous

Software R package as collection of useful utility functions from Seminar for Statistics (SfS) at ETH Zurich.

• Resource
• RRID
• 1 year ago - by Anonymous

Software remote control interface that enables introspection and control of user agents. Provides platform- and language-neutral wire protocol as way for out-of-process programs to remotely instruct behavior of web browsers.

• Resource
• RRID
• 1 year ago - by Anonymous

Software package contains functions for statistical calculations and random number generation.

• Resource
• RRID
• 1 year ago - by Anonymous

Apache HTTP Server Project is collaborative software development effort aimed at creating freely-available source code implementation of HTTP (Web) server. Project is jointly managed by group of volunteers located around the world, using the Internet and the Web to communicate, plan, and develop the server and its related documentation.

• Resource
• RRID
• 1 year ago - by Anonymous

Software linear models for differential abundance analysis of microbiome compositional data. Used to tackle compositional effects in differential abundance analysis. It fits linear regression models on centered log2-ratio transformed data, identifies bias term due to transformation and compositional effect, and corrects bias using mode of regression coefficients. It could fit mixed-effect models.

• Resource
• RRID
• 2 years ago - by Anonymous

Software R package for analyzing and interpreting results of PICRUSt2 functional prediction. Offers range of features, including pathway name/description annotations, advanced differential abundance methods, and visualization of differential abundance results. Used for PICRUSt2 predicted functional profile analysis and visualization.

• Resource
• RRID
• 2 years ago - by Anonymous

Provides comprehensive curated information on bacteria in human mouth and aerodigestive tract, including pharynx, nasal passages, sinuses and esophagus. eHOMD taxonomy provides provisional naming scheme for currently unnamed taxa, based on 16S rRNA sequence phylogeny, so that strain, clone and probe data from any laboratory can be directly linked to a stably named reference scheme.

• Resource
• RRID
• 2 years ago - by Anonymous