Curator Dashboard

Software system for performing bioinformatics analyses. System includes knowledge base where the capabilities of bioinformatics software is explicitly and formally encoded. Backwards-chaining rule-based expert system comprised of data model that can capture richness of biological data, and inference engine that reasons on knowledge base to produce workflows. Knowledge base is populated with rules to analyze microarray and next generation sequencing data.

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• RRID
• 1 year ago - by Anonymous

Website for predicting the subtype of triple negative breast cancer sample based on its gene expression profile.

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• RRID
• 1 year ago - by Anonymous

Facility for sequencing samples for the MD Anderson Cancer Center.

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• RRID
• 1 year ago - by Anonymous

Oncology translational research organization focused on development and utilization of Patient-Derived Xenograft models. Preclinical contract research organization specializing in patient-derived xenografts.

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• SciCrunch
• 1 year ago - by Anonymous

Pharmaceutical, biopharmaceutical, and medical device company founded in December 2000 in Shanghai. Contract research organization.

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• SciCrunch
• 1 year ago - by Anonymous

This toolbox contains many kinds of kits that you may be interested in during fMRI data analysis. This toolbox is a homebrew kits built during practical ASL(arterial spin labeling) based CBF data analysis. Meanwhile, this toolbox is also compatible with BOLD data analysis. Everyone would find something useful for their own data analysis! This toolbox is run and tested on SPM8 with MATLAB 7.6.0(R2008a) under the Linux OS. Theoretically, most of the functions (except the menu1&2 which are specially designed for the Batch Editor of SPM8) of this toolbox should be compatible with SPM5 and should also work smoothly under the Windows OS. Feel free to give feedback to authors if you encounter any bugs or problems. Senhua Zhu Center for functional Neuroimaging, University of Pennsylvania 3 W.Gates Bldg, 3400, Philadelphia, PA (19104), United States Email: zshtom@gmail.com ; senhua@mail.med.upenn.edu QQ group number (QQ群): 60524357 Google group: https://groups.google.com/d/forum/fmri-grocer

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• NIF
• 1 year ago - by Anonymous

DNase I is used to remove DNA from protein and nucleic acid samples, and to nick DNA as a first step to incorporate labeled bases into DNA. Several theses5 and dissertations6-24 have cited use of product DN25 in their protocols

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• 1 year ago - submitted by Sajukumar Kavitha

Software integrated pipeline for plant NGS analysis.

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• 1 year ago - by Anonymous

Software signal processing and spectral analysis toolbox designed for local field potential recordings.

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• 1 year ago - submitted by Mark Laubach

Microsoft Excel Macro that automatically calculates and reports assay parameters of the Seahorse XF Cell Mito Stress Test as absolute Oxygen Consumption Rate in pmol O2/min and supports assay result data from all Agilent Seahorse XF Analyzers.

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• 1 year ago - by Anonymous

Core provides centralized support, systems, and services for IT specific to research. Systems and services include areas of high-performance computing, virtual machine hosting, large scale storage, and high-performance networking and data transfer.Provides MSU researchers with consulting on technology budgets and implementation for grants and support for IT components of major research instrumentation, software, and specialized or unique research technology needs.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Interactive website for cancer statistics using California Cancer Registry data. Provides detailed statistics for cancer site by gender, race/ethnicity, age, county/region, and for select number of cancer sites, by histology.

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• 1 year ago - by Anonymous

Open source software for chromatography, spectrometry and spectroscopy. Data from different systems can be imported and analyzed. Runs under Windows, macOS and Linux. Supports to handle GC/MS, GC/FID, HPLC-UV/VIS, FTIR, PCR and NMR data.

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• RRID
• 1 year ago - by Anonymous

Free file manager, SSH File Transfer Protocol, File Transfer Protocol, WebDAV, Amazon S3, and secure copy protocol client for Microsoft Windows.

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• 1 year ago - by Anonymous

Database that provides access to organic compounds data compiled and distributed by NIST under the Standard Reference Data Program.

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• 1 year ago - by Anonymous

Web-based application for automated structural classification of chemical entities. Automated chemical classification with a comprehensive, computable taxonomy. Provides hierarchical chemical classification of chemical entities as well as structure-based textual description, based on chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds.

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• RRID
• 1 year ago - by Anonymous

Software extension of t-distributed stochastic neighbor embedding, the spatially resolved t-SNE (SpaSNE) designed to preserve both global gene expression and spatial structure for spatially resolved profiling data. Gives comprehensive low-dimensional visualization that could best reflect the molecular similarities of cells and the spatial interactions between cells.

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• RRID
• 1 year ago - submitted by Chen Tang

Software collection consisting of Python-based framework for connectome-based analysis using Ray to parallelize CPM and set of scripts to perform common operations and analyses on the Human Connectome Project's neuroimaging data with focus on task-based fMRI.

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• 1 year ago - submitted by Tobias Bachmann

Software tool for calling and analyzing SNVs from spatial transcriptomics data.

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• 1 year ago - submitted by Yi Liu

IPD2 is updated version of InfectiousPathogenDetector, in-silico GUI-based automated pathogen analysis pipeline for seamless analysis of data from heterogenous NGS platforms. IPD performs integrated variants analysis, along with systematic quantification of pathogen genomes. IPD additionally has an in-built SARS-CoV-2 analysis module, for assignment of viral clades of the samples analyzed and an automated report generation.

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• RRID
• 1 year ago - by Anonymous