Curator Dashboard

Institute was created to support and develop research on the brain and nervous system, serving collaborative, interdisciplinary model conducive to innovation and breakthrough discoveries.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Repository of software curation tools. Contains curation tools guide.

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• RRID
• 1 year ago - by Anonymous

Software tool to embed bedgraph data into Pretext contact maps.

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• RRID
• 1 year ago - by Anonymous

Software tool to filter short artificial deletion variations by Oxford Nanopore Technologies (ONT) R9 and R10 flow cells and chemistries.

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• 1 year ago - by Anonymous

Dabur Research Foundation (DRF), established in 1979, is Indian Contract Research Organization offering comprehensive preclinical services in Drug Discovery and Development. Focused on identifying potential lead molecules and developing drugs to conducting IND enabling studies.

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• 1 year ago - by Anonymous

DNA synthesis company provides comprehensive services including gene synthesis, protein expression, gene editing, etc., supporting one-stop solutions for global users.

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• 1 year ago - by Anonymous

Company from India specializes in Innovative Organic Chemistry and Synthesis of Unique Complex Molecules, Stable Isotope Labelled compounds and Metabolites.

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• 1 year ago - by Anonymous

Provides access and training on two FACS Calibur benchtop cytometers, one FACS Canto II multi-laser digital cytometer, one FACS Aria II cell sorter, one FACS Aria III cell sorter, and one Sony SH800 cell sorter. These systems are primarily used for the rapid analysis and sorting of single-cell suspensions. To analyze the light scatter and fluorescence characteristics of a cell population, one of the benchtop machines is appropriate. For more complex assays requiring more than four differentiating markers, then the high-end multi-laser Canto II system would work well. To rapidly retrieve or sort a particular sub-group of cells from a mixed sample, then a cell sorter would be required.

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• RRID
• 1 year ago - submitted by Edyta Vieth

Core dedicated to the protocol driven collection, analysis, and reporting of behavioral data using a blend of classic and innovative assays. Supports neuroscience, psychology, pharmacology, genetics, cancer, and development by providing advanced tools and expertise for the precise measurement and interpretation of behavior.

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• RRID
• 1 year ago - by Anonymous

Software genome completeness evaluation tool based on miniprot.

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• dkNET
• 1 year ago - by Anonymous

Software Python pipeline for mitochondrial genome assembly from PacBio High Fidelity reads. Used to find, circularise and annotate mitogenome from PacBio assemblies.

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• dkNET
• 1 year ago - by Anonymous

Standalone tool to compute assembly summary statistics and manipulate assembly sequences in FASTA, FASTQ or GFA [.gz] format. Gfastats stores assembly sequences internally in a GFA-like format. This feature allows gfastats to seamlessly convert FAST* to and from GFA [.gz] files. Gfastats can also build an assembly graph that can in turn be used to manipulate the underlying sequences following instructions provided by the user, while simultaneously generating key metrics for the new sequences.

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• dkNET
• 1 year ago - by Anonymous

Software Foreign Contamination Screening - GX source code. Part of NCBI’s Foreign Contamination Screen (FCS) tool suite, optimized to identify and remove contaminant sequences in new genomes.

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• dkNET
• 1 year ago - by Anonymous

Software application as genomic k-mer counter and sequence utility.

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• dkNET
• 1 year ago - by Anonymous

Fully automated patch clamp system which records from either 4 or 8 cells simultaneously. Automated electrophysiology machine.

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• 1 year ago - by Anonymous

Facility dedicated to study of degraded and low DNA yield samples, such as environmental DNA, historical DNA, or ancient DNA. Offers positive pressure lab spaces that follow strict decontamination procedures to prevent human, bacterial, and fungal contamination. It is physically isolated from tissue samples or polymerase chain reaction (PCR) products to avoid contamination from samples with higher DNA concentration and quality. The space has dedicated equipment necessary for DNA extraction and PCR-free sample preparation.

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• 1 year ago - by Anonymous

Software package implements method to deal with missing data. The package creates multiple imputations (replacement values) for multivariate missing data.Various diagnostic plots are available to inspect the quality of the imputations.

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• 1 year ago - submitted by Rachel Thompson

Core offers sequencing, upstream library construction (bulk RNA/DNA, single-cell), and post-sequencing analysis. Core uses Illumina NextSeq 2000 sequencers (and a MiSeq). Single-cell (fresh, frozen, FFPE) libraries (3' & 5' RNA-Seq, CITE-Seq, ATAC-Seq, Multiome, FLEX) are made with 10X Chromium X.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Offers wide range of electron microscopy (both transmission and scanning), accessory instrumentation, and expertise to the scientific and engineering community through education, collaboration, and service. Provides facilities for preparation and examination of many types of bulk and thin specimens (foils/films), fine particles, and replicas, including biological materials, by transmission and scanning electron microscopy.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Core facilitates research, collaboration, education and outreach in all science from soft biological matter to hard physical matter, specializing in surface analysis and nano-scale characterization. Instruments include Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS), X-ray Photoelectron Spectroscopy (XPS), Fourier Transform Infrared Spectroscopy (FT-IR), Confocal Raman System, High Resolution Stylus Profilometer, 3D Optical Microscope, Spectroscopic Ellipsometer, and Zetasizer.Staff provides hand-on training, collaboration and assistance.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth