Curator Dashboard

Facility is a Biosafety Level III-Plant quarantine located at UC-Davis. Provides a secure environment for research on invasive plant pests. Facility has greenhouse and laboratory space for research on plant pests and pest plants that are required to be maintained at biosecurity level III-plant level by state and/or federal officials.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Specialized facility dedicated to supporting research, diagnostics, and scientific development through advanced microscopy, functional imaging, and image analysis techniques. Provides imaging systems including fluorescence microscopes, whole-slide scanners, confocal and super-resolution microscopes in both upright and inverted configurations, light-sheet microscopy, miniscopes, and multiphoton systems optimized for in vivo and ex vivo imaging. Provides a specialized whole-sample clearing service covering the complete workflow, from tissue preparation to image acquisition and subsequent digital processing. For image analysis and quantification, users have access to established commercial software packages, including Imaris and Arivis. Provides workstation equipped with open-source libraries and applications, such as Cellpose, StarDist and Napari. Images and associated metadata can also be generated in formats fully compatible with the OMERO data management platform. Staff provide expertise, training and technical support.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Core provides access to analytical instrumentation for the investigation of material properties. Facility specializes in high-resolution imaging and chemical analysis through electron microscopy (SEM, TEM, STEM) and X-ray spectrometry and diffraction (XPS, XRD). Supports interdisciplinary research across engineering, chemistry, physics, and biology by offering comprehensive instrument training, technical support, and scientific expertise tailored to specific experimental systems. Provides resources for sample preparation, instrumentation for nanoscale research, including the only aberration-corrected Scanning Transmission Electron Microscope (STEM) in the Sacramento region, which is equipped with specialized in-situ holders for dynamic experimentation. AMCaT operates Environmental Scanning Electron Microscope (ESEM) allowing for the study of materials under variable pressure and humidity conditions. Provides high-precision XRD systems optimized for crystallography and thin-film analysis.

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• SciCrunch
• 1 month ago - submitted by Edyta Vieth

Core has a range of instruments for characterization and structure elucidation of chemical and biophysical samples. Mostly equipped in the area of Mass Spectrometry with an addition of NMR and optical spectroscopy.

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• RRID
• 1 month ago - by Anonymous

Core provides access to biophysical and biochemical instrumentation focused on the study of conformations, activities, and assembly of biological and other macromolecules.

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• RRID
• 1 month ago - by Anonymous

Repository by Hugging Face that provides educational content and projects aimed at helping learners gain practical experience in machine learning and AI development. Agentic machine learning agent. ML intern that autonomously researches, writes, and ships good quality ML related code using the Hugging Face ecosystem with access to docs, papers, datasets, and cloud compute.

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• RRID
• 1 month ago - by Anonymous

Hardware accelerated bioinformatics system. Platform processes large sets of genomic data from next-generation sequencing (NGS). It converts raw genetic reads into aligned sequences and identifies genetic variants. Based on DRAGEN Bio-IT Processor, which is integrated on a Field Programmable Gate Array (FPGA) card, is available in a preconfigured server that can be seamlessly integrated into bioinformatics workflows. The platform can be loaded with highly optimized algorithms for many different NGS secondary analysis pipelines. Access Points: You can access or purchase it via local servers, integrated instrument computers, or cloud environments, but it cannot be freely downloaded or used without an authorized commercial license or supported Illumina ecosystem setup.

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• RRID
• 1 month ago - by Anonymous

Database containing common germline alterations. dbSNP build 151 contains a subset of common germline variants (such as single nucleotide polymorphisms) defined by a minor allele frequency (MAF) of 1% or greater in major population groups.Database is used as a reference for various applications, such as measuring non-synonymous mutations in tumor mutation burden calculations.

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• RRID
• 1 month ago - by Anonymous

Python software system for replayable physical evidence and deterministic regression verification in bounded robotic and industrial workcells. It supports camera-based state observation, multi-camera fusion and tracking, deterministic record/replay, incident evidence bundles, verification, regression testing, and overload/backpressure evaluation.

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• SciCrunch
• 1 month ago - submitted by Miko Parkkinen

Software tool as general purpose gene finding program suitable for both eukaryotic and prokaryotic genomes. Gene prediction software.

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• RRID
• 1 month ago - by Anonymous

Software tool to perform phasing on long-read data. Genome inference module based on recurrent neural networks that enables long-read variant calling and nanopore assembly polishing in the PEPPER-Margin-DeepVariant pipeline.

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• RRID
• 1 month ago - by Anonymous

Software tool for plotting pureTarget repeat panel results (generates waterfall plot). Used for Tandem repeat genotyping and visualization from PacBio HiFi data.

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• RRID
• 1 month ago - by Anonymous

Software tools to visualize methylation data using bam file. Used to manipulate and visualize modified base bam files.

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• RRID
• 1 month ago - by Anonymous

Software package for Tandem repeat calling and analysis. Used to detect and size tandem repeat (TR) expansions from long-read DNA sequencing data. Used to scan genomes or genotype specific loci linked to over 40 human neurological and genetic disorders, such as Huntington's disease.

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• RRID
• 1 month ago - by Anonymous

Core provides expertise in study design, statistical analysis, neuroimaging processing, data management, programming, bioinformatics, and standardized research workflows to support high-quality, reproducible science. Investigators are supported by a dedicated team of statisticians, software engineers, and data scientists with access to high-performance computing, standardized neuroimaging pipelines, and expertise in large-scale population neuroscience, machine learning, and artificial intelligence.

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• RRID
• 1 month ago - submitted by Rachael Gotcher

Core provides comprehensive support for multimodal neuroscience research through two research-dedicated 3T MRI scanners (Siemens Prisma-NX and GE Discovery MR750), advanced EEG—including simultaneous EEG-fMRI—and a full-service molecular laboratory. Investigators have access to structural, functional, diffusion, and perfusion imaging, biomarker collection and analysis, biospecimen biobanking, and dedicated technical expertise to support study development, implementation, and data acquisition.

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• RRID
• 1 month ago - submitted by Rachael Gotcher

Core provides researchers with specialized resources to inform thoughtful and testable intervention strategies. Core services include survey and database development, qualitative research and health economics consultation, participant recruitment, primary data collection, and access to a mobile clinical research van.

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• RRID
• 1 month ago - by Anonymous

Core provides investigators with data acquisition and management, advanced biostatistical modeling, and secure high-performance computing (HPC) infrastructure. Provides researchers with tools they need to successfully conduct rigorous, impactful population health research in rural and frontier communities.

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• RRID
• 1 month ago - by Anonymous

Software tool as C++ implementation of the variant caller VarDict used in cancer research and clinical genomics to analyze next-generation sequencing (NGS) data from DNA or RNA samples to detect genetic mutations.

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• RRID
• 1 month ago - submitted by Joachim Wolff

Federal government hospital located at 830 Chalkstone Avenue in Providence, Rhode Island. Run by the Department of Veterans Affairs, it provides medical care, emergency services, and mental health support to military veterans in Rhode Island and nearby parts of Massachusetts.

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• RRID
• 1 month ago - submitted by Edyta Vieth