Curator Dashboard

Web application for comparing cell type assignments and other cell-based annotations (e.g., donor demographics, anatomic locations, batch variables, and quality control metrics). Used for connecting brain cell types across studies of health and Alzheimer's Disease.

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• 1 year ago - submitted by Edyta Vieth

Low flow, high-sensitivity Liquid Chromatography-Mass Spectrometry system delivers retention time precision from nano up to 100 μL/min at pressures up to 1500 bar for reproducible nano-, capillary-, and micro-flow LC-MS.

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• 1 year ago - submitted by Fabrizio Donnarumma

Software framework for integrating gene expression and chromatin accessibility, enabling the inference of regulatory mechanisms and the prediction of gene expression from cross-modal data. Repository contains code and tutorials for the following tasks: multimodal pretraining, cross-modal prediction, inferring regulatory network and potential analysis.

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• 1 year ago - submitted by chenxi xie

Software package for modern re-imagining of data frame. Provides 'tbl_df' class with stricter checking and better formatting than traditional data frame.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

Database contains code and data that represent the history of local time for many representative locations around the globe. It is updated periodically to reflect changes made by political bodies to time zone boundaries, UTC offsets, and daylight-saving rules.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

X.Org project provides open source implementation of X Window System. The development work is being done in conjunction with the freedesktop.org community. The X.Org Foundation is the educational non-profit corporation whose Board serves this effort, and whose Members lead this work.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

Software tools that provide framework to help other GNU packages produce multi-lingual messages.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

Software C library for asynchronous DNS requests. Provides set of library functions, datatypes, and enumerations which integrators will use for their implementations.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

Software tool to automate statistical analysis of RNA seq data acquired from polysome profile or ribosome footprinting experiments.

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• 1 year ago - submitted by Maria de los Angeles Gomez Munoz

Website serves as digital resource for plastic surgery professionals. Educational and resource platform dedicated to plastic surgeons, trainees, and researchers. Provides access to curated content, including links to major plastic surgery societies, journal repositories, clinical resources, and upcoming events. Serves as comprehensive hub for continuous professional development and collaboration in the field of plastic surgery.

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• 1 year ago - by Anonymous

Software tool that combines the utility of NanoFilt and NanoLyse, for filtering sequencing reads based on quality, length, and contaminating sequences, delivers 7-fold speed up compared to the Python implementation, making use of the Rust-Bio library and Rust bindings to minimap2.

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• 1 year ago - by Anonymous

Cellular Imaging Core facility is light microscopy core in Boston Children's Hospital's Neurobiology Program. The Core maintains systems for Widefield, confocal, multiphoton, and lightsheet light microscopy as well as sample preparation and image processes tools and technologies to assist the microscopy community of Boston Children's Hospital in addition to the surrounding greater Boston area. Core services and equipment are available to all upon request, contact core staff for access.

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• 1 year ago - submitted by Harry Cramer

Core provides in vitro HIV-1 neutralizing antibody assay services. Serves as resource for assessing breadth and potency of HIV-1 neutralizing antibodies, and for characterizing neutralization phenotype of HIV-1 isolates. Investigators send monoclonal antibodies or serum samples from vaccinated or HIV-1-infected individuals to the core for in vitro testing using the validated TZM.bl neutralizing antibody assay. The core also has the capability to phenotype primary HIV-1 isolates for sensitivity to broadly neutralizing antibodies. GCLP-compliant, In vitro testing of monoclonal antibodies or seurm samples, Validated TZM.bl neutralizing antibody assay, Phenotoyping of primary HIV-1 isolates.

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• 1 year ago - submitted by Judith Webber

Core offers services from sample processing from both fresh and frozen, as well as fixed cells or tissues to library preparation and next-generation sequencing (NGS) for bulk DNA/RNA sequencing and single-cell/nuclei sequencing. For single-cell studies, core is equipped with Chromium X system from 10X Genomics. Sequencing capabilities include Illumina Novaseq6000 and NextSeq 500. Offers single cell spatial transcriptomics with CosMx SMI platform. Other equipped includes CytAssit instrument from 10X genomics for VISIUM spatial transcriptomic and QIAConnect from Qiagen for nucleic acid and protein extraction.

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• 1 year ago - by Anonymous

Software tool for partial reimplementation of bcftools for VCF Zarr.

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• 1 year ago - by Anonymous

Software tool to convert bioinformatics file formats to Zarr.

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• 1 year ago - by Anonymous

Registration of stained histology sections using GreedyFHist.

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• 1 year ago - submitted by Maximilian Wess

MIIT is a Python framework for integrating spatially resolved multi-omics data.

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• 1 year ago - submitted by Maximilian Wess

Software tool for ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash. Species-level metagenome profiler that estimates genome-to-metagenome containment average nucleotide identity (ANI) through zero-inflated Poisson k-mer statistics, enabling ANI-based taxa detection. Offers precise, efficient profiling with accurate containment ANI estimation even for low-coverage genomes.

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• 1 year ago - by Anonymous

Algorithm for registration of stained fresh frozen serial images. Used for registration of stained histology images.

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• 1 year ago - by Anonymous