Curator Dashboard

Software application that supports the execution of multivariable prediction models with patient-specific characteristics so that personalized estimates of outcomes, often as a function of alternative treatments, can be generated within the routine flow of patient care. This can support evidence-based, shared medical decision-making to improve the safety, outcomes and cost-effectiveness of care. The current application is in the setting of generating individualized informed consent documents for PCI. However, the tool can support that translation of novel biomarkers, genetics and pharmacogenomic interactions into clinical care. The platform gives healthcare providers instantaneous access to the latest clinical prediction models coupled with rich visualization tools. These models may come from national organizations, outcomes researchers or a specific institution. In addition to decision support applications, it can be used to rapidly create personalized educational materials, patient letters, informed consent documents and a broad array of other items that can help elevate the quality of healthcare delivery.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Web application that filters and links enriched output data identifying sets of associated genes and terms, producing metagroups of coherent biological significance. The method uses fuzzy reciprocal linkage between genes and terms to unravel their functional convergence and associations. It can also be accessed through its web service.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

Open source software platform for building powerful Web portals that support scientific discovery, learning, and collaboration. Some refer to such web sites as collaboratories supporting team science. They call them hubs because each site becomes a focal point for its user community. HUBzero includes a powerful content management system built to support scientific activities. Users of a HUB can work together in projects, publish datasets and computational tools with Digital Object Identifiers (DOIs), and make these publications available for others to use--not as dusty downloads, but as live, interactive digital resources. Simulation/modeling tools published on a hub can be accessed with the click of a button. They run on cloud computing resources, campus clusters, and other national high-performance computing (HPC) facilities and serve up compelling visualizations. Projects can create public or private groups for collaboration and take advantage of over 10,000 Joomla! software extensions that provide additional functionality.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Data and knowledge management infrastructure for the new Center for Clinical and Translational Science (CCTS) at the University of Utah. This clinical cohort search tool is used to search across the University of Utah clinical data warehouse and the Utah Population Database for people who satisfy various criteria of the researchers. It uses the i2b2 front end but has a set of terminology servers, metadata servers and federated query tool as the back end systems. FURTHeR does on-the-fly translation of search terms and data models across the source systems and returns a count of results by unique individuals. They are extending the set of databases that can be queried.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Repository of digital research and educational materials created and used by the Rutgers University community and its strategic collaborators. The goal of the repository is to advance research and learning at Rutgers, to foster interdisciplinary collaboration, and to contribute to the development of new knowledge through the archiving, preservation, and presentation of digital resources. Original research products and papers of the faculty and administrators and the unique resources of the libraries will be permanently preserved and made accessible with tools developed to facilitate and encourage their continued use. RUcore''s developing collection includes * Primary source materials-manuscripts, photographs, maps, and multimedia, from the libraries'' special collections. * Resources about New Jersey, from the state''s libraries, museums, archives and historical societies from the New Jersey Digital Highway collection. * Electronic theses and dissertations, in collaboration with the Rutgers University graduate schools. * Faculty and Departmental publications: pre-prints, postprints, presentations, technical reports, etc.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

A single library software prototype transitioning to a to an open-source platform ready for adoption and extension at other institutions wishing to provide research data sharing and discovery services. Datastar''''s ability to expose metadata about research datasets in a standard semantic format called Linked Data will be enhanced to support selective interchange of related information with VIVO, an open-source semantic researcher networking tool gaining prominence through adoption at multiple U.S. universities, in the federal government, and internationally.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Database that aggregates and markets technologies from CTSA institutions as well as those of the National Institutes of Health, with the goal of enhancing research activity and private partnerships across the CTSA consortium. Regular, automatic updating with a standardized template facilitates broad participation by CTSA consortium members. Currently, there are over a dozen CTSAs contributing information on their technologies to the site. CTSA-IP Mission * Intellectual Property information exchange * Links publicly available licensing opportunities from CTSI Institutions in an easily searchable format that connects providers & users. * Aim of creating a consortium view of IP, licensing & sponsored research opportunities. * Stimulus to collaboration and partnering with and between CTSA member institutions.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

An open-source natural language processing system for information extraction from electronic medical record clinical free-text. This is a system through which one creates one or more pipelines to process clinical notes and to identify clinical named entities. It processes clinical notes, identifying types of clinical named entities, drugs, diseases/disorders, signs/symptoms, anatomical sites and procedures. Each named entity that is found is given attributes for the text span, the ontology mapping code, the context (family history of, current, unrelated to patient), and negated/not negated. cTAKES is built on the UIMA framework. cTAKES 2.5 does not provide a GUI of its own for installation or processing. The cTAKES documentation shows how to use the GUIs provided by the UIMA framework, and how to run cTAKES from a command line. Before using cTAKES you need to know that cTAKES does not provide any mechanisms of its own to handle patient data securely. It is assumed that cTAKES is installed on a system that can process patient data, or that any data being processed by cTAKES has already been through a deidentification step in order to comply with any applicable laws. The tool has been developed and deployed at Mayo Clinic since early 2000.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Data management tool designed to support multicenter research studies including key components needed in a full-featured research data management application. It is web based and builds on mysql, xml, and tomcat components. Key features include: * Support for complex, highly customized case report forms (XML based configuration) * Security and access at the site, user, and form levels * User management * Management of multiple studies from a single instance * CDISC Operational Data Model (ODM) data extraction for input to analysis software * Longitudinal data collection They are working on major revisions to improve performance and add important new features. Version 2 should be available by mid-2013. They are making this version available now so that other centers with multisite study and/or complex form needs can leverage CDART for their needs. CDART will have a higher support requirement than REDCap and is not intended to replace REDCap for single site studies. Files are provided to assist in setting up an instance of CDART.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

This resource was created to host descriptions of protocols, definitions and rules for the reliable identification and localization of human brain anatomy and discussions of best practices in brain labeling. Project for manual anatomical labeling of human brain MRI data, and the visual presentation of labeled brain images.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The Open Annotation Collaboration project aims to facilitate the emergence of a Web and Resource-centric interoperable annotation environment that allows leveraging annotations across the boundaries of annotation clients, annotation servers, and content collections. To this end, interoperability specifications will be devised. Additionally, this project will demonstrate through implementations an interoperable annotation environment enabled by the interoperability specifications in settings characterized by a variety of annotation client/server environments, content collections, and scholarly use cases and will seed widespread adoption by deploying robust, production-quality applications conformant with the interoperable annotation environment in ubiquitous and specialized services, tools, and content used by scholars -- e.g.: Zotero, AXE, LORE, Co-Annotea, Pliny; JSTOR, AustLit, MONK. Alpha3 Data Model: The Open Annotation Data Model specifies an approach for associating annotations with resources, using a methodology conformant with the Architecture of the World Wide Web and the Linked Data initiative. It draws on the Annotea model, as well as more recent extensions of that model.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

FlyCircuit is a public database for online archiving, cell type inventory, browsing, searching, analysis and 3D visualization of individual neurons in the Drosophila brain.

• Resource
• SciCrunch
• 16 years ago - by Anonymous

Italian university located in city of Padua, region of Veneto, northern Italy. University of Padua was founded in 1222 by group of students and teachers from Bologna. Padua is the second oldest university in Italy.

• Organization
• SciCrunch
• 17 years ago - submitted by Andrea Stagg

Web-based, open access scientific networking system providing one-stop shopping for investigators seeking collaborators at Columbia University Medical Center in New York City. Contact information, grants, and publications are integrated to facilitate searches by topic or person.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Maintains breeding colony of Mexican axolotls (Ambystoma mexicanum) that distributes axolotl embryos, larvae, and adults to laboratories and classrooms throughout the United States and abroad. Their mission is to serve biology research programs and educators by providing experimental material and expertise and by encouraging and facilitating the exchange of information and ideas.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Data set of images of the human nervous system focusing on neuroanatomy.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

A collection of images of the human nervous system focusing on disease and injury.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE. Documented on May 27,2025. Compact 3rd edition of The Rat Brain Atlas of Paxinos & Watson published in 1997, it is the most widely used stereotaxic reference system for rat brain. The illustrations and nomenclature of the atlas have become standard tools used by almost all research neuroscientists who deal with anatomy, physiology, or function. It has been subsequently updated, with the 6th edition being the most recent. The 3rd edition is the most recent one available online for free. The program runs in Adobe Acrobat Reader.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

An atlas that facilitates fMRI analysis understanding by providing access to all of the functions that have been associated with each of the 52 Brodmann's areas or corresponding gyri. Links to main publications supporting the findings are provided in PubMed ID format. Brodmann's areas with similar functions and locations have been collapsed into a single page. The word left or right has been added indicating a lateralized function. All the abstracts published on PubMed on fMRI and brain PET studies in which the Brodmann's area or its anatomical correlate were mentioned have been reviewed up to August 2008. Abstracts with poorly described experimental methods or findings clearly conflicting with established knowledge provided by the clinical model were excluded. Studies on patients were also excluded.

• Resource
• SciCrunch
• 14 years ago - by Anonymous

Database facilitating information integration and mining within the pig and across species of all genomics / genetics research results accumulated over the years including pig gene expression, quantitative trait loci (QTL), candidate gene, and whole genome association study (WGAS) results. The key functions developed so far include pig gene pages (a centralized gene search tool), a local copy of Biomart (for customizable genome information queries), genome feature alignment tools (Pig QTLdb and Gbrowse), integrated gene expression information (ANEXDB and ESTdb), a dedicated pig genome and gene set BLAST server, and virtual comparative map database and tools (VCmap). By developing the PGD, it is our aim to collaboratively utilize existing databases and tools via networked functions, such as web services, database API, etc., to maximize the potential of all related databases through the PGD implementation.

• Resource
• SciCrunch
• 14 years ago - by Anonymous