Curator Dashboard

Core offers researchers and beekeepers, throughout the world, services to identify floral resources and evaluate characteristics of honey and pollen.

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• RRID
• 1 year ago - by Anonymous

Computational platform, which enables data-driven, fully-automated and ultra-fast cell-type identification based on given scRNA-seq data, combined with comprehensive cell marker database as background information. Deployed as both interactive web-tool and open-source R-package.

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• 1 year ago - by Anonymous

Software tool for selecting the best-fit model of evolution for DNA and protein alignments. Used for selection of DNA and Protein evolutionary models.

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• 1 year ago - by Anonymous

Core provides services including Sequencing, Library preparation, Bioinformatics Analysis and Processing. Experienced staff provide expertise to users.

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• SciCrunch
• 1 year ago - submitted by Edyta Vieth

Provides services in the conduct of exercise interventions, nutrition interventions, or prevention-based clinical interventions. Facility offers well-trained, specialized staff and inviting space for study participants to participate in population-based research.

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• 1 year ago - submitted by Cassie Sather

Software Python package to perform genomic selection. Predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework. Novel interpretable DL-based genomic prediction model that integrates comprehensive species- and tissue-level transcriptional regulatory functional annotations to predict phenotypes.

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• 1 year ago - submitted by ma wenlong

The python package 'DeepAnnotation' can be used to perform genomic selection (GS), which is a promising breeding strategy for agricultural breeding. DeepAnnotation predicts phenotypes from comprehensive multi-omics functional annotations with interpretable deep learning framework.

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• 1 year ago - submitted by ma wenlong

Open source Python-based image-analysis software that rapidly detects and segments berries and extracts morphometric data on fruit quality traits such as berry color, size, shape, and uniformity. Used for quantifying visual phenotypes of cranberries and other berries.

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• dkNET
• 1 year ago - by Anonymous

Software library and associated tools for reading and writing bigwig and bigbed files. High-performance BigWig and BigBed library in Rust.

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• RRID
• 1 year ago - by Anonymous

Software Python tool to perform motif enrichment analysis in sets of regions with different tools and identify high confidence TF cistromes.

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• RRID
• 1 year ago - by Anonymous

Backend application to process high-resolution histology images to DeepZoomImage format, made of smaller tiles, for use in the QUINT Workflow.

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• SciCrunch
• 1 year ago - by Anonymous

Software pipeline for universal mapping of ATAC-seq.

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• RRID
• 1 year ago - by Anonymous

Software Python package to optionally compute statistical test and add statistical annotations on plots generated with seaborn. Used to add statistical significance or custom annotations on seaborn plots.

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• RRID
• 1 year ago - by Anonymous

Software Python/Rust package for single-cell epigenomics analysis.

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• RRID
• 1 year ago - by Anonymous

Software Python library to train, interpret, and apply deep learning models to DNA sequences. Comprehensive framework for DNA sequence modeling and design.

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• RRID
• 1 year ago - by Anonymous

Software application for biological sequence analysis for the modern age.

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• RRID
• 1 year ago - by Anonymous

Software package to access the Borzoi models, which are convolutional neural networks trained to predict RNA-seq coverage at 32bp resolution given 524kb input sequences.

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• RRID
• 1 year ago - by Anonymous

Software Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.

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• RRID
• 1 year ago - by Anonymous

Software Python package for training sequence-based deep learning models on scATAC-seq data, for capturing enhancer code and for designing cell type-specific sequences.

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• RRID
• 1 year ago - by Anonymous

Core is part of the UCI Sue and Bill Gross stem cell research center. Provides various fee based services to researchers at UCI towards flow cytometry and cell sorting.

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• RRID
• 1 year ago - submitted by Arul Subramanian