Curator Dashboard

Software open-source Python library that makes it easy to work with geospatial data. It extends the popular data analysis library, Pandas, by allowing you to perform spatial operations on geometric shapes like points, lines, and polygons.

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• 1 month ago - by Anonymous

Software application developed by Illumina that translates the raw, binary output files from Illumina sequencing systems into usable, standard text-based files known as FASTQ files. Conversion software that both demultiplexes data and converts BCL files generated by Illumina sequencing systems to standard FASTQ file formats for downstream analysis.

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• 1 month ago - submitted by Jacques Deguine

Public research university in Uruguay. Based in Montevideo, it is the most important higher education institution in the country. One of the largest public universities in South America in terms of enrollment.

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• 1 month ago - submitted by Edyta Vieth

The Institut Pasteur de Montevideo (IP Montevideo) is one of the most recent affiliates of the Institut Pasteur International Network (RIIP in French), composed of 33 independent centres located in five continents and united by the same values. Dedicated to scientific research in biomedicine, IP Montevideo is composed by high-tech scientific platforms in areas such as genomics, proteomics, bioinformatics, molecular and cellular biology; laboratories are open to young scientists’ research projects; it has become an international education centre with courses on the latest biological knowledge and state-of-the-art technologies; and promotes start-ups for the development of biotechnological applications.

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• 1 month ago - submitted by Edyta Vieth

Core was established as a joint unit between the University of the Republic and the Pasteur Institute of Montevideo, with the aim of supporting national and regional scientific and technological development. Our team of highly qualified imaging scientists is committed to technological development and the delivery of services of the highest quality, organized around four fundamental pillars: Services, Training and dissemination, Technology development and innovation (hardware, software, and methods), and Biological research projects.

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• 1 month ago - by Anonymous

Software pipeline for automated identification of targeted cell types from multiple heterogeneous single-cell transcriptomic datasets (formats supported: .h5ad). It is designed to simplify and accelerate integrative large-scale single-cell analyses.

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• 1 month ago - submitted by Guillaume Lemaire

Core provides specialized expertise, instrumentation, and technical support for assessment of mitochondrial function in cells, tissues, and isolated mitochondria. Provides standardized mitochondrial isolation, experimental design consultation, assay optimization, data analysis, and interpretation. Services include high-resolution respirometry using the Oroboros O2k-FluoRespirometer, simultaneous measurement of oxygen consumption and reactive oxygen species production, mitochondrial respiratory control and coupling analyses, electron transport system complex activity assays, citrate synthase activity, mitochondrial calcium handling, and assessment of mitochondrial content and oxidative stress. Studies can be performed using isolated mitochondria, permeabilized tissue fibers, tissue homogenates, and intact cells, depending on the scientific question and sample availability. Core also assists with protocol development, selection of normalization strategies, troubleshooting, training, and preparation of methods and data for grants, presentations, and publications.

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• 1 month ago - by Anonymous

Core provides services including preparation of research tissue specimens for microscopic investigation with imaging capabilities for brighfield and fluorescent microscopy. Offers preparation tissue specimens for Histological sectioning utilizing both frozen and paraffin embedding techniques, preparation of mounted sections on glass slides. Facility maintains microtomes and cryostats for the preparation of tissue sections and houses several high end fluorescent microscopy systems, including the Leica Stellaris 8 tau-STED Super Resolution Microscope, the Nikon A1R+ HD Confocal Microscope,and the Nikon Ti2 HCA Inverted Fluorescence Microscope. Core also provides access to the Spatial Biology Platforms: Akoya PhenoCycler Fusion 2.0, 10x Genomics Visium and 10x Genomics Xenium.

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• 1 month ago - submitted by Luke Fritzky

Software application designed to simplify process of generating and processing data on MIBIScope platform. Scripts for interacting with and generating data from the commercial MIBIScope.

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• 1 month ago - by Anonymous

Software R library facilitates the analysis of the difference between the proprotion of cells in clusters between two scRNA-seq samples. Used to calculate the proportional difference in cell number proportions between clusters in scRNA-seq.

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• 1 month ago - by Anonymous

Software framework constructed in three levels for predicting the peptide and TCR binding recognition. Used to recognize TCR–antigen binding, by combining the concepts of meta-learning and the neural Turing machine.

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• 1 month ago - by Anonymous

Specialized biorepository that collects, creates, and distributes patient specific, de-identified human induced pluripotent stem cell (iPSC) lines to researchers worldwide. SCVI Biobank iPSC lines cover a broad spectrum of cardiac diseases, healthy controls, and non-cardiac disease controls. Used to study cardiovascular diseases, model disease processes, and accelerate the development of personalized medicine.

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• 1 month ago - submitted by Edyta Vieth

Core is a fee-for-use COBRE core that houses multi-photon microscopes and light microscopes that allow high-resolution visualization of cell and tissue structure (mitochondrial networks, collagen structure), metabolic function (optical redox and NADH fluorescence lifetime measurements), and biomolecular composition (autofluorescent metabolic cofactors, lipid deposition).

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• 1 month ago - by Anonymous

Software MHC I ligand prediction package with competitive accuracy and documented implementation. Used for peptide-MHC I binding affinity prediction.

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• 1 month ago - by Anonymous

Facility promotes and facilitates faculty and student research in biomedical bench science. Provides supports for clinical research, expertise and resources to clinical and translational scientists and trainees. Offers services of clinical research coordinators and BSL2 facilities for the processing, storage or molecular experimentation of human biological samples. In addition, equipment and technical assistance for performing ELISAs, cell proliferation assays, autoantibody assays, nitric oxide (NO) measurements, reactive oxygen species (ROS) determination, proteomics, mitochondrial function, flow cytometry, Western immunoblotting, and cell cytokine secretion profiling are available.

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• 1 month ago - by Anonymous

Multi-center facility at Columbia University Irving Medical Center, created to help users take advantage of up-to-date resources in the stem cell field in a timely and cost-efficient way. Offered services include giving access to quality-controlled pluripotent stem cells and stem cell-derivatives prepared using standardized approaches; genome editing services for the generation of custom-designed cell lines; training sessions and informal interactions between scientists from multiple laboratories working on different stem cell models. Some reagents commonly used in stem cell labs, as mTeSR1 media and irradiated mouse embryonic fibroblasts, are also available at discounted prices for our users. We are connected to Stem Cell COREdinates(link is external and opens in a new window), a consortium of pluripotent stem cell-focused core facilities, which allows us to take advantage of the sharing of the most updated and efficient protocols, expertise, and reagents.

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• 1 month ago - by Anonymous

Software R package for enhanced visualization of gene set enrichment analysis in biomedicine. Used to visualize Gene Set Enrichment Analysis (GSEA) results.

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• 1 month ago - by Anonymous

Core provides comprehensive preclinical imaging and radiochemistry services. Expertise covers the entire pipeline from study design to data analysis. Services include preclinical research (mice, rats, CAM assay, zebrafish, slugs) using radionuclide imaging via SPECT/CT and PET/CT, as well as 3T MRI, µCT, radiochemistry, tracer biokinetics, and kinetic modeling.

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• 1 month ago - submitted by Edyta Vieth

Real-time live-cell imaging system designed for long-term time-lapse dynamic observation of living cells, including intracellular calcium flux recording, tumor spheroid, organoid 3D growth tracking, cell migration, apoptosis and pharmacodynamic screening. Equipped with multi-channel fluorescence excitation modules, the system supports continuous non-invasive real-time monitoring under physiological culture environment, used in stem cell research, oncology, cardiovascular pharmacology and cell biology experiments.

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• 1 month ago - submitted by Sui Weikai

Core offers solar cell fabrication, characterization and testing capabilities. Additional services include making modules and performing reliability testing. Core is designed with industrial compatibility in mind. Although fabrication on smaller substrates or even pieces is possible, the native substrate form factor is currently 156 mm silicon. New equipment is being selected to maintain compatibility with evolving solar manufacturing sizes (e.g., M12 = 295 mm diagonal). Supported technology thrusts reinforce industry relevance. Considering solely silicon technology, architectures researched include Al BSF, PERC, SHJ and various tandems, predominantly silicon-based with a perovskite top cell.

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• 1 month ago - submitted by CoreFacilities Admin