Curator Dashboard

Software library for processing of electroencephalogram (EEG) and other biomedical signals like electroencephalogram (EEG), electrocorticogram (ECoG), electrocardiogram (ECG), electrooculogram (EOG), electromyogram (EMG), respiration, and so on. Biosig contains tools for quality control, artifact processing, time series analysis, feature extraction, classification and machine learning, and tools for statistical analysis. Many tools are able to handle data with missing values (statistics, time series analysis, machine learning). Another feature is that more then 40 different data formats are supported, and a number of converters for EEG,, ECG and polysomnography are provided. Biosig has been widely used for scientific research on EEG-based BraiN-Computer Interfaces (BCI), sleep research, and ECG and HRV analysis. It provides software interfaces several programming languages (C, C++, Matlab/Octave, Python), and it provides also an interactive viewing and scoring software for adding, and editing of annotations, markers and events.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The Distributed Annotation System (DAS) defines a communication protocol used to exchange annotations on genomic or protein sequences. It is motivated by the idea that such annotations should not be provided by single centralized databases, but should instead be spread over multiple sites. Data distribution, performed by DAS servers, is separated from visualization, which is done by DAS clients. The advantages of this system are that control over the data is retained by data providers, data is freed from the constraints of specific organisations and the normal issues of release cycles, API updates and data duplication are avoided. DAS is a client-server system in which a single client integrates information from multiple servers. It allows a single machine to gather up sequence annotation information from multiple distant web sites, collate the information, and display it to the user in a single view. Little coordination is needed among the various information providers. DAS is heavily used in the genome bioinformatics community. Over the last years we have also seen growing acceptance in the protein sequence and structure communities. A DAS-enabled website or application can aggregate complex and high-volume data from external providers in an efficient manner. For the biologist, this means the ability to plug in the latest data, possibly including a user''s own data. For the application developer, this means protection from data format changes and the ability to add new data with minimal development cost. Here are some examples of DAS-enabled applications or websites for end users: :- Dalliance Experimental Web/Javascript based Genome Viewer :- IGV Integrative Genome Viewer java based browser for many genomes :- Ensembl uses DAS to pull in genomic, gene and protein annotations. It also provides data via DAS. :- Gbrowse is a generic genome browser, and is both a consumer and provider of DAS. :- IGB is a desktop application for viewing genomic data. :- SPICE is an application for projecting protein annotations onto 3D structures. :- Dasty2 is a web-based viewer for protein annotations :- Jalview is a multiple alignment editor. :- PeppeR is a graphical viewer for 3D electron microscopy data. :- DASMI is an integration portal for protein interaction data. :- DASher is a Java-based viewer for protein annotations. :- EpiC presents structure-function summaries for antibody design. :- STRAP is a STRucture-based sequence Alignment Program. Hundreds of DAS servers are currently running worldwide, including those provided by the European Bioinformatics Institute, Ensembl, the Sanger Institute, UCSC, WormBase, FlyBase, TIGR, and UniProt. For a listing of all available DAS sources please visit the DasRegistry. Sponsors: The initial ideas for DAS were developed in conversations with LaDeana Hillier of the Washington University Genome Sequencing Center.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Commercial instrument and chemical vendor. Developer and manufacturer of specialized technological products for life science research and clinical diagnostics markets.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

THIS RESOURCE IS NO LONGER IN SERVICE, documented August 23, 2016. Map improvement server that returns a bias minimized, 6-fold averaged map generated from a model and diffraction data (with optional preceding Molecular Replacement). It does not build or repair the model for you (yet). For automated model building, you need to install a local copy of CCP4 and ARP/wARP (aka wARP&Trace), RESOLVE, MAID, or TEXTAL.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Systems used in areas such as pharmaceutical drug discovery, antibody characterization, proteomics, immunogenicity, biotherapeutic development and manufacture, and many life science research applications.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

BiQ Analyzer is a software tool for easy visualization and quality control of DNA methylation data from bisulfite sequencing. Highlights: - End-to-end support of the analysis process: from raw sequence files to a comprehensive documentation and visualization. - Automatically generate publication-quality lollipop diagrams (show example.) - Integrated 1-click multiple sequence alignment. - Automated CpG highlighting- never spend your time highlighting CpGs by hand anymore. - Open electropherogram files to check for sequencing problems (requires an electropherogram viewer such as Chromas LITE.) - Generate MethDB-compatible DNA methylation files for database submission. - Factor 5 speedup of sequence analysis while at the same time achieving better data quality. Intended users: - Anyone who works with DNA methylation data from bisulfite sequencing. - Occasional users as well as experts (the former will benefit from the help that the program gives in order to achieve a good quality management whereas the latter will save hours and days of tedious work.) Sponsors: This resource is supported by the Max Planck Institute. Keywords: Software, Visualization, DNA, Methylation, Data, Bisulfite, Sequencing, Electropherogram, Analysis,

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The laboratory studies global gene expression programs in fission yeast (S. pombe). They apply a wide range of integrated approaches to analyse regulatory networks during cell proliferation, differentiation and quiescence including genetic and environmental perturbations. They are also interested in genetic diversity, genome evolution, and the complex interactions between genotypes, phenotypes, and the environment. The relative simplicity of the yeast cell promises a deeply satisfying, systems-level understanding of its inner workings within our life time Sponsors: This research is mainly funded by Cancer Research UK and the EC FP7 PhenOxiGEn project. Keywords: Gene, Expression, S.pombe, Yeast, Cell, Proliferation, Differentiation, Environmental, Genetic, Diversity, Genome, Evolution, Genotype, Phenotype, Environment,

• Resource
• SciCrunch
• 14 years ago - by Anonymous

A repository of tools for analysis and annotation of CAZYmes (Carbohydrate Active enZYmes)., THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 13 years ago - by Anonymous

This portal takes you to the NCBI''s BLAST Assembled RefSeq Genomes. The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity between sequences. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches. BLAST can be used to infer functional and evolutionary relationships between sequences as well as help identify members of gene families. Sponsors: This resource is supported by the National Institutes of Health. Keywords: BLAST, Genome, Search engine, Sequence, Biological, Local, Alignment, Nucleotide, Protein, Program, Database, Stastical, Functional, Evolutionaary, Gene,

• Resource
• SciCrunch
• 17 years ago - by Anonymous

The goals of this sequencing effort are to produce and publicly release a whole-genome assembly and auto-annotation of the Aedes genome representing 8X sequence coverage. In collaboration, these centers have delivered the target 8X draft coverage of the disease vector genome. Assembly of the genome was performed using the Broad''s whole genome assembly package ARACHNE (Batzoglou et al., 2002 and Jaffe et al., 2003). The Aedes genome will be annotated in a collaborative effort involving both MSCs and Vectorbase, which is a bioinformatics resource center at the University of Notre Dame. Sponsor: This resource is supported by the National Institute of Allergy and Infectious Diseases. Keywords: Genome, BLAST, Similarity, Search, Engine, Sequence, Bioinformatics, Resource,

• Resource
• SciCrunch
• 17 years ago - by Anonymous

A healthcare company that provides biomedical solutions and diagnostic and preclinical systems to life science professionals.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Software for gene prediction in eukaryotic genomic sequences. Serves as a basis for further steps in the analysis of sequenced and assembled eukaryotic genomes.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Atta is an information system that supports the core information process at the National Biodiversity Institute in Costa Rica (INBio). As such, Atta facilitates the processes of capturing, managing, generating and disseminating information on Costa Rican biodiversity. This system maintains a relational database with over two million records, each one corresponding to a single specimen. Through a unique bar code physically attached to each specimen, users of Atta have efficient and systematic access to the associated digital information. This information includes, but is not restricted to, the where, when, how, and who collected the specimen. When the taxonomic identification process is concluded, this information is supplemented with a complete taxonomic description of the specimen Atta is INBio''s second version of a comprehensive, efficient, scalable, multi-taxa information system that now exploits modern technologies such as multimedia, object-oriented development, GIS, and Internet. Sponsors: This resource is supported by Costa Rican Biodiversity. Keywors: Biodiversity, Database, Speciman, Biology, Technology, Taxonomy,, THIS RESOURCE IS NO LONGER IN SERVICE. Documented on September 16,2025.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Service to identify a wide range and large number of microbial species (~ 2000) by simple phenotypic testing for dangerous pathogens and for filamentous fungi. The company produces and sells a variety of test kits and instruments. Keywords: Microbial, Microarray, Phenotype, Bacterial, Bacterium, Cell, Technology, Assay, Phenotypic, Testing, PAthogen, Bio terrorism, Fungus, Drug, Discovery, Development, Cellular, Research, Genomics, Toxicogenomics,

• Resource
• SciCrunch
• 17 years ago - by Anonymous

A set of programs for performing multipoint exclusion mapping of affected sibling pair data for discrete traits. (entry from Genetic Analysis Software)

• Resource
• SciCrunch
• 14 years ago - by Anonymous

For the purposes of the Aquatic Code, spring viraemia of carp (SVC) means infection with the viral species SVC virus (SVCV) tentatively placed in the genus Vesiculovirus of the family Rhabdoviridae.<BR/> Methods for surveillance and diagnosis are provided in the Aquatic Manual.<BR/> The recommendations in this Chapter apply to: common carp (Cyprinus carpio carpio) and koi carp (Cyprinus carpio koi), crucian carp (Carassius carassius), sheatfish (also known as European catfish or wels) (Silurus glanis), silver carp (Hypophthalmichthys molitrix), bighead carp (Aristichthys nobilis), grass carp (white amur) (Ctenopharyngodon idellus), goldfish (Carassius auratus), orfe (Leuciscus idus), and tench (Tinca tinca). These recommendations also apply to any other susceptible species referred to in the Aquatic Manual when traded internationally.<BR/> 1) Periodicals<BR/> *Scientific and Technical Review (available on the Online Bookshop and Website);<BR/> *Bulletin (available on the Online Bookshop and Website);<BR/> *Disease Information (available on the WAHID interface);<BR/> *World Animal Health (available on the Online Bookshop and on the WAHID interface);<BR/> Health standards<BR/> *Terrestrial Animal Health Code (available on the Online Bookshop and Website);<BR/> *Aquatic Animal Health Code (available on the Online Bookshop and Website);<BR/> *OIE Quality Standard and Guidelines for Veterinary Laboratories: Infectious Diseases (available on the Online Bookshop);<BR/> *Manual of Diagnostic Tests and Vaccines for Terrestrial Animals (available on the Online Bookshop and Website);<BR/> *Manual of Diagnostic Tests for Aquatic Animals (available on the Online Bookshop in English only (2009 version) and also on the Website).<BR/>

• Resource
• SciCrunch
• 17 years ago - by Anonymous

It presents beautifully. Even if youve never used Keynote before, youll find creating a presentation surprisingly simple. It all starts with an enhanced Theme Chooser that lets you preview an impressive collection of 44 Apple-designed themes. Drag across a theme to skim through its slide designs. Once youve chosen the perfect canvas for your presentation, simply substitute placeholder text and graphics with your own words and images. Thanks to the Slide Navigator, the progress of your presentation and its organization are always in view. Easy-to-use tools let you add elements such as tables, charts, media, and shapes to your slides. Add a table with a click. Just as easily add a 3D chart that you can animate. With the Media Browser, you can drag and drop photos from your iPhoto or Aperture libraries, movies from your Movies folder, and music from your iTunes library. Make each slide in your presentation look its absolute best, using the powerful graphics tools built into Keynote. Quickly and cleanly remove the background of an image using the Instant Alpha tool. Or mask it within a predrawn shape, such as a circle or a star. With alignment and spacing guides, you can easily find the center of the slide and see if objects are spaced evenly. So anything you add to your slides graphics, images, text boxes, or shapes is placed precisely where you want it. If youre adding a flowchart or a diagram to your slide, then youll appreciate the new connection lines feature. Connection lines between two objects remain anchored, no matter what changes you make. Move the objects around, and the lines move with them.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Apache Tomcat is an open source software implementation of the Java Servlet and JavaServer Pages technologies. The Java Servlet and JavaServer Pages specifications are developed under the Java Community Process. Apache Tomcat is developed in an open and participatory environment and released under the Apache License version 2. Apache Tomcat is intended to be a collaboration of the best-of-breed developers from around the world. We invite you to participate in this open development project. Apache Tomcat powers numerous large-scale, mission-critical web applications across a diverse range of industries and organizations. Some of these users and their stories are listed on the PoweredBy wiki page.

• Resource
• SciCrunch
• 17 years ago - by Anonymous

Supports research in cellular analysis, genomics, proteomics, and drug discovery. It has merged with Thermo Fisher Scientific. One of several brands under Thermo Fisher Scientific corporation.

• Resource
• SciCrunch
• 15 years ago - by Anonymous

OMPC aims to enable reuse of the huge open and free code base of MATLAB on a free and faster growing Python platform. Running Python and MATLAB in a single interpreter avoids issues with running two separate applications. Python adds general purpose programming libraries to the convenient syntax of the language of technical computing. OMPC is not an interpreter, it lets Python to do the work. This means that if Python gets faster OMPC gets faster too. OMPC translates the m-files preserving the structure of the original programs as much as possible. Although OMPC comes with a library that emulates the features of numerical array of MATLAB there is nothing that will stop you from running the translated code the way you like it. This means that you could run the OMPC generated code on IronPython, Jython, PyPy or whatever else if you write your own numerical class. Sponsors: This resource is supported by RIKEN Brain Science Institute.

• Resource
• SciCrunch
• 17 years ago - by Anonymous