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| Resource Name | Proper Citation | Abbreviations | Resource Type |
Description |
Keywords | Resource Relationships | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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ChIPDiff Library Comparison Resource Report Resource Website |
ChIPDiff Library Comparison (RRID:SCR_010871) | ChIPDiff Library Comparison | software resource | Provides a solution for the identification of Differential Histone Modification Sites (DHMSs) by comparing two ChIP-seq libraries (L1 and L2). | is listed by: OMICtools | OMICS_00469 | SCR_010871 | 2026-08-01 12:04:18 | 0 | ||||||||||
|
SEAL Resource Report Resource Website 100+ mentions |
SEAL (RRID:SCR_010914) | SEAL | software resource | A suite of distributed software applications for aligning short DNA reads, and manipulating and analyzing short read alignments. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:21697132 | biotools:seal, OMICS_00682 | https://bio.tools/seal | SCR_010914 | 2026-08-01 12:04:01 | 121 | |||||||
|
aCGHtool Resource Report Resource Website 1+ mentions |
aCGHtool (RRID:SCR_010915) | aCGHtool | software resource | A software tool for the normalization, visualization, breakpoint detection, and comparative analysis of array-CGH data which allows the accurate and sensitive detection of CNAs. | is listed by: OMICtools | OMICS_00699 | SCR_010915 | 2026-08-01 12:04:18 | 1 | ||||||||||
|
Agilent Genomic Workbench Resource Report Resource Website 100+ mentions |
Agilent Genomic Workbench (RRID:SCR_010918) | Agilent Genomic Workbench | software resource | A comprehensive design and analysis tool for setting up and interpreting your microarray experiments. | is listed by: OMICtools | OMICS_00702 | SCR_010918 | 2026-08-01 12:04:18 | 248 | ||||||||||
|
DBChIP Resource Report Resource Website 1+ mentions |
DBChIP (RRID:SCR_010872) | DBChIP | software resource | Detects differential binding of transcription factors with ChIP-seq. | is listed by: OMICtools | OMICS_00470 | SCR_010872 | 2026-08-01 12:03:59 | 5 | ||||||||||
|
DIME Resource Report Resource Website 10+ mentions |
DIME (RRID:SCR_010874) | DIME | software resource | R-package for identifying differential ChIP-seq based on an ensemble of mixture models. | bio.tools |
is listed by: OMICtools is listed by: bio.tools is listed by: Debian |
biotools:DIME, OMICS_00473 | https://bio.tools/DIME | SCR_010874 | 2026-08-01 12:04:18 | 29 | ||||||||
|
ChIPModule Resource Report Resource Website 1+ mentions |
ChIPModule (RRID:SCR_010877) | ChIPModule | software resource | A software tool for systematic discovery of transcription factors and their cofactors from ChIP-seq data. | is listed by: OMICtools | OMICS_00477 | SCR_010877 | ChIPModule: Systematic discovery of transcription factors and their cofactors from ChIP-seq data | 2026-08-01 12:04:18 | 1 | |||||||||
|
CloudBurst Resource Report Resource Website |
CloudBurst (RRID:SCR_010911) | CloudBurst | software resource | A new parallel read-mapping algorithm optimized for mapping next-generation sequence data to the human genome and other reference genomes, for use in a variety of biological analyses including SNP discovery, genotyping, and personal genomics. | mapreduce/hadoop, bio.tools |
is listed by: OMICtools is listed by: Debian is listed by: bio.tools has parent organization: SourceForge |
PMID:19357099 | Free | OMICS_00657, biotools:cloudburst | https://bio.tools/cloudburst | SCR_010911 | 2026-08-01 12:04:00 | 0 | ||||||
|
ERNE Resource Report Resource Website 10+ mentions |
ERNE (RRID:SCR_010912) | ERNE | software resource | A short string alignment package whose goal is to provide an all-inclusive set of tools to handle short (NGS-like) reads. |
is listed by: OMICtools has parent organization: SourceForge |
OMICS_00662 | SCR_010912 | 2026-08-01 12:04:18 | 46 | ||||||||||
|
F-Seq Resource Report Resource Website 50+ mentions |
F-Seq (RRID:SCR_010880) | F-Seq | software resource | A software package that generates a continuous tag sequence density estimation allowing identification of biologically meaningful sites whose output can be displayed directly in the UCSC Genome Browser. |
is listed by: OMICtools has parent organization: University of North Carolina at Chapel Hill; North Carolina; USA |
OMICS_00482 | SCR_010880 | 2026-08-01 12:04:17 | 83 | ||||||||||
|
Carleton University; Ontario; Canada Resource Report Resource Website |
Carleton University; Ontario; Canada (RRID:SCR_011136) | university | Public comprehensive university in Ottawa, Ontario, Canada. Founded in 1942 as Carleton College, a private, non-denominational evening college to serve returning World War II. |
is parent organization of: Aptamer Base is parent organization of: An Extended and Parallel version of Clustal is parent organization of: Carleton University Tissue Engineering and Applied Materials Hub Core Facility |
Crossref funder ID:100008095, grid.34428.39, Wikidata:Q1041737, nlx_45745, ISNI:0000 0004 1936 893X | https://ror.org/02qtvee93 | SCR_011136 | 2026-08-01 12:04:20 | 0 | ||||||||||
|
Aldevron Resource Report Resource Website 10+ mentions |
Aldevron (RRID:SCR_011017) | Aldevron | commercial organization | Contract manufacturing services company, specializing in plasmid DNA manufacturing, protein services and antibody development.Producesg high quality plasmid DNA, proteins, enzymes, antibodies, and other biologicals in support of clients objectives. | is listed by: ScienceExchange | SciEx_9447 | http://www.scienceexchange.com/facilities/aldevron | SCR_011017 | 2026-08-01 12:04:19 | 46 | |||||||||
|
Medical Research Council Resource Report Resource Website 10+ mentions |
Medical Research Council (RRID:SCR_011018) | MRC, UK MRC | institution | The Medical Research Council is a publicly-funded organization dedicated to improving human health. We support research across the entire spectrum of medical sciences, in universities and hospitals, in our own units, centers and institutes in the UK, and in our units in Africa. | is related to: EMIF | Wikidata: Q746879, Crossref funder ID: 501100000265, nlx_inv_1005080, ISNI: 122478951, grid.14105.31 | https://ror.org/03x94j517 | SCR_011018 | UK Medical Research Council, British Medical Research Council | 2026-08-01 12:04:19 | 18 | ||||||||
|
Catholic University of Louvain; Louvain-la-Neuve; Belgium Resource Report Resource Website |
Catholic University of Louvain; Louvain-la-Neuve; Belgium (RRID:SCR_011141) | UCL | university | Belgium's largest French speaking university. |
is related to: Pharma-Planta Consortium is related to: PRECISESADS is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Imaging Platform Core Facility is parent organization of: Catholic University of Louvain Institute of Experimental and Clinical Research Flow Cytomerty Platform Core Facility is parent organization of: Catholic University of Louvain Genomics platform Core Facility |
grid.7942.8, Wikidata:Q378134, ISNI:0000 0001 2294 713X, nlx_143960, Crossref funder ID:501100008135 | https://ror.org/02495e989 | http://www.uclouvain.be/en-index.html | SCR_011141 | Catholic University of Louvain, Universit� catholique de Louvain, Universite catholique de Louvain | 2026-08-01 12:04:21 | 0 | |||||||
|
Mouse Clinical Institute; Alsace; France Resource Report Resource Website 10+ mentions |
Mouse Clinical Institute; Alsace; France (RRID:SCR_011021) | MCI, ICS | institution | Research infrastructure for generation of new mouse models,being therefore the most important transgenic mouse production unit in France. | is related to: AgedBrainSYSBIO | nlx_158126, ISNI: 0000 0004 0404 8159, grid.452426.3 | https://ror.org/03cjqqq10 | SCR_011021 | Mouse Clinical Institute, Institut Clinique de la Souris, Institut Clinique de la Souris; Alsace; France | 2026-08-01 12:04:19 | 10 | ||||||||
|
Cayetano Heredia University; Lima; Peru Resource Report Resource Website 10+ mentions |
Cayetano Heredia University; Lima; Peru (RRID:SCR_011142) | university | Private nonprofit university located in Lima, Peru. It was named in honor of Cayetano Heredia, one of the eminent Peruvian physicians of the 19th century. The university is overseen by a board of trustees and is not owned by any private or state entity. | is parent organization of: CELL- PREVEN Project | nlx_71545 | http://www.upch.edu.pe/ | SCR_011142 | UPCH | 2026-08-01 12:04:21 | 33 | |||||||||
|
Center for Information Technology Resource Report Resource Website |
Center for Information Technology (RRID:SCR_011143) | CIT | government granting agency | The Center for Information Technology''s (CIT) mission is to provide, coordinate, and manage information technology and to advance computational science. CIT incorporates the power of modern computers into the biomedical programs and administrative procedures of the NIH by focusing on three primary activities: conducting computational biosciences research, developing computer systems, and providing computer facilities. CIT supports NIH''s research and management programs with efficient, cost-effective administrative and high-powered scientific computing, software development, networking, and telecommunications services. CIT also provides bioinformatics support through its scientists, engineers, and mathematicians. Among its activities, the CIT: * engages in collaborative research and provides collaborative support to NIH investigators in the area of computational bioscience * provides efficient, cost-effective information systems and networking services * provides state-of-the-art scientific and administrative computing facilities * identifies new computing technologies with innovative applications to biomedical research * creates, purchases, and distributes software applications * provides NIH staff with computing information, expertise, and training * provides data-processing and high-performance computing facilities, integrated telecommunications data networks, and services to the U.S. Department of Health and Human Service (HHS) and other Federal agencies * serves as a data center to HHS and other Federal agencies * develops, administers, and manages NIH systems and provides consulting services to NIH Institutes and Centers in support of administrative and business applications |
has parent organization: National Institutes of Health is parent organization of: Federal Interagency Traumatic Brain Injury Research Informatics System is parent organization of: MIPAV: Medical Image Processing and Visualization |
nlx_inv_1005031 | SCR_011143 | 2026-08-01 12:04:21 | 0 | ||||||||||
|
Central University of the Caribbean; Puerto Rico; USA Resource Report Resource Website |
Central University of the Caribbean; Puerto Rico; USA (RRID:SCR_011145) | UCC | university | Private university in Bayamón, Puerto Rico that focuses on graduate studies and professional certifications in the health sciences. |
is parent organization of: UCC Common Instrumentation Area and Services is parent organization of: UCC Behavioral Testing Facility is parent organization of: UCC Biomedical Proteomic Facility is parent organization of: UCC Data Management and Statistical Research Support Unit is parent organization of: UCC HIV and Substance of Abuse Laboratory Core is parent organization of: UCC Immunocytochemistry Laboratory is parent organization of: UCC Neuronal Glia Culture Facility is parent organization of: UCC Optical Imaging Facility is parent organization of: UCC Protein and Nucleic Acid Core Facility is parent organization of: UCC Transmission Electron Microscopy Laboratory |
grid.253922.d, Wikidata:Q5061968, nlx_156113, ISNI:0000 0000 9699 6324 | https://ror.org/01rpmzy83 | SCR_011145 | Universidad Central del Caribe, Central University of the Caribbean | 2026-08-01 12:04:21 | 0 | ||||||||
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Chang Gung University; Taoyuan; Taiwan Resource Report Resource Website 1+ mentions |
Chang Gung University; Taoyuan; Taiwan (RRID:SCR_011149) | CGU | university | Chang Gung University is a private university in Guishan District, Taoyuan City, Taiwan. | is parent organization of: Chang Gung University College of Medicine; Taoyuan; Taiwan | nlx_157707 | SCR_011149 | Chang Gung University | 2026-08-01 12:04:21 | 1 | |||||||||
|
Baylor University; Texas; USA Resource Report Resource Website 1+ mentions |
Baylor University; Texas; USA (RRID:SCR_011029) | university | Private Baptist research university in Waco, Texas. Baylor was chartered in 1845 by the last Congress of the Republic of Texas. |
is parent organization of: Baylor University Department of Psychology and Neuroscience is parent organization of: Baylor College of Medicine - Shaw Laboratory is parent organization of: Genboree Discovery System is parent organization of: National Center for Macromolecular Imaging is parent organization of: Sea Urchin Genome Project is parent organization of: Sea Urchin Genome Project is parent organization of: Tribolium castaneum Genome Project is parent organization of: Honey Bee Genome Project is parent organization of: EMDataResource.org is parent organization of: BCM Department of Neuroscience Andreas Tolias Lab is parent organization of: HapMap 3 and ENCODE 3 is parent organization of: SimRare is parent organization of: PhenoMan is parent organization of: Human Epigenome Atlas is parent organization of: Baylor College of Medicine; Department of Pharmacology is parent organization of: Baylor College of Medicine Department of Neuroscience is parent organization of: Mouse Mutagenesis Center for Developmental Defects is parent organization of: Gene Atlas is parent organization of: Dictyostelium discoideum genome database is parent organization of: Bovine Genome Project is parent organization of: BCM ET is parent organization of: Atlas2 is parent organization of: Genboree Workbench is parent organization of: BCM Analyte Center is parent organization of: BCM Circulating Tumor Cells Core Facility is parent organization of: Baylor College of Medicine Human Genome Sequencing Center is parent organization of: Mouse Genome Project is parent organization of: Dictyostelium discoideum genome database |
ISNI:0000 0001 2111 2894, Crossref funder ID:100007492, nlx_50627, grid.252890.4, Wikidata:Q812573 | https://ror.org/005781934 | SCR_011029 | 2026-08-01 12:04:19 | 1 |
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