Name: Gene Ontology Tools
Keywords: registry, annotation browser, annotation search engine, annotation visualization, ontology, annotation editor, database, data warehouse, software library, statistical analysis, slimmer-type tool, term enrichment, text mining, protein interaction, functional similarity, semantic similarity, analysis, annotation, visualization, editor

Resource Name

Gene Ontology Tools

RRID:SCR_006941 RRID Copied

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Gene Ontology Tools (RRID:SCR_006941)

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Resource Information

URL: http://geneontology.org/docs/tools-overview/

Proper Citation: Gene Ontology Tools (RRID:SCR_006941)

Description: Collection of tools developed by GO Consortium and by third parties. Tools are listed by category or alphabetically and continue to be improved and expanded.

Abbreviations: GO Tools

Resource Type: catalog, software repository, database, data or information resource, software resource

Keywords: registry, annotation browser, annotation search engine, annotation visualization, ontology, annotation editor, database, data warehouse, software library, statistical analysis, slimmer-type tool, term enrichment, text mining, protein interaction, functional similarity, semantic similarity, analysis, annotation, visualization, editor

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Availability: Free, Freely available

Resource Name: Gene Ontology Tools

Resource ID: SCR_006941

Alternate IDs: nlx_146273

Alternate URLs: https://neuinfo.org/mynif/search.php?q=*&t=indexable&nif=nlx_146273-1

Old URLs: http://www.geneontology.org/GO.tools.shtml

This resource

lists	GOALIE
lists	GenNav
lists	High-Throughput GoMiner
lists	Onto-Design
lists	Avadis
lists	GONUTS
lists	PiNGO
lists	TM4 Microarray Software Suite - TIGR MultiExperiment Viewer
lists	FunSimMat
lists	BioPerl
lists	Database for Annotation Visualization and Integrated Discovery
lists	GOToolBox Functional Investigation of Gene Datasets
lists	StRAnGER
lists	Short Time-series Expression Miner (STEM)
lists	GORetriever
lists	Gene Ontology Browsing Utility (GOBU)
lists	GeneTools
lists	GOSlimViewer
lists	go-moose
lists	Network Ontology Analysis
lists	OBO-Edit
lists	Onto-Compare
lists	Onto-Express
lists	OntoVisT
lists	STRAP
lists	CGAP GO Browser
lists	COBrA
lists	Gene Class Expression
lists	GeneInfoViz
lists	GOfetcher
lists	GoFish
lists	GOProfiler
lists	GOanna
lists	Manatee
lists	Pandora - Protein ANnotation Diagram ORiented Analysis
lists	TAIR Keyword Browser
lists	Wandora
lists	GeneMANIA
lists	GOTaxExplorer
lists	go-db-perl
lists	Onto-Miner
lists	Onto-Translate
lists	ToppGene Suite
lists	DBD - Slim Gene Ontology
lists	go-perl
lists	ONTO-PERL
lists	OWLTools
lists	Blip: Biomedical Logic Programming
lists	OWL API
lists	CLENCH
lists	BiNGO: A Biological Networks Gene Ontology tool
lists	CateGOrizer
lists	FuSSiMeG: Functional Semantic Similarity Measure between Gene-Products
lists	ProteInOn
lists	GeneMerge
lists	GraphWeb
lists	ClueGO
lists	CLASSIFI - Cluster Assignment for Biological Inference
lists	GOHyperGAll
lists	FuncAssociate: The Gene Set Functionator
lists	GOdist
lists	FuncExpression
lists	FunCluster
lists	FIVA - Functional Information Viewer and Analyzer
lists	GARBAN
lists	GOEx - Gene Ontology Explorer
lists	SGD Gene Ontology Slim Mapper
lists	GOArray
lists	GoSurfer
lists	GOtcha
lists	MAPPFinder
lists	GoAnnotator
lists	MetaGeneProfiler
lists	OntoGate
lists	ProfCom - Profiling of complex functionality
lists	SerbGO
lists	SOURCE
lists	Ontologizer
lists	THEA - Tools for High-throughput Experiments Analysis
lists	Generic GO Term Mapper
lists	GREAT: Genomic Regions Enrichment of Annotations Tool
lists	GoBean - a Java application for Gene Ontology enrichment analysis
lists	TXTGate
lists	GO-Module
lists	IT-GOM: Integrated Tool for IC-based GO Semantic Similarity Measures
lists	G-SESAME - Gene Semantic Similarity Analysis and Measurement Tools
lists	Expression Profiler
lists	GOChase
lists	Whatizit
lists	REViGO
lists	WEGO - Web Gene Ontology Annotation Plot
lists	Blast2GO
lists	InterProScan
lists	PubSearch
lists	GO Online SQL Environment (GOOSE)
lists	Gene Ontology For Functional Analysis (GOFFA)
lists	MGI GO Browser
lists	GOEAST - Gene Ontology Enrichment Analysis Software Toolkit
lists	Ontology Lookup Service
lists	WebGestalt: WEB-based GEne SeT AnaLysis Toolkit
lists	g:Profiler
lists	OwlSim
lists	GOrilla: Gene Ontology Enrichment Analysis and Visualization Tool
lists	FastSemSim
lists	RamiGO
lists	GeneCodis
lists	FunSpec
lists	FunNet - Transcriptional Networks Analysis
lists	agriGO
lists	GOblet
lists	DynGO
lists	SeqExpress
lists	ProbeExplorer
lists	GOstat
lists	Onto-Express To Go (OE2GO)
lists	Tk-GO
lists	Spotfire
lists	GOMO - Gene Ontology for Motifs
lists	GFINDer: Genome Function INtegrated Discoverer
lists	Agile Protein Interactomes DataServer
lists	elk-reasoner
lists	Flash Gviewer
lists	L2L Microarray Analysis Tool
lists	OnEx - Ontology Evolution Explorer
lists	Semantic Measures Library
lists	AmiGO
lists	Babelomics
lists	T-profiler
lists	QuickGO
lists	FSST - Functional Similarity Search Tool
lists	GoPubMed
lists	Bioconductor
lists	ErmineJ
lists	Comparative Toxicogenomics Database (CTD)
lists	LexGrid
lists	Candidate Genes to Inherited Diseases
lists	EGAN: Exploratory Gene Association Networks
lists	Generic GO Term Finder
lists	Integrated Manually Extracted Annotation
lists	EASE: the Expression Analysis Systematic Explorer
is listed by	NIF Data Federation
has parent organization	Gene Ontology

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