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This service exclusively searches for literature that cites resources. Please be aware that the total number of searchable documents is limited to those containing RRIDs and does not include all open-access literature.

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On page 1 showing 1 ~ 3 papers out of 3 papers

JBrowseR: an R interface to the JBrowse 2 genome browser.

  • Elliot A Hershberg‎ et al.
  • Bioinformatics (Oxford, England)‎
  • 2021‎

Genome browsers are an essential tool in genome analysis. Modern genome browsers enable complex and interactive visualization of a wide variety of genomic data modalities. While such browsers are very powerful, they can be challenging to configure and program for bioinformaticians lacking expertise in web development.


Reactome enhanced pathway visualization.

  • Konstantinos Sidiropoulos‎ et al.
  • Bioinformatics (Oxford, England)‎
  • 2017‎

Reactome is a free, open-source, open-data, curated and peer-reviewed knowledge base of biomolecular pathways. Pathways are arranged in a hierarchical structure that largely corresponds to the GO biological process hierarchy, allowing the user to navigate from high level concepts like immune system to detailed pathway diagrams showing biomolecular events like membrane transport or phosphorylation. Here, we present new developments in the Reactome visualization system that facilitate navigation through the pathway hierarchy and enable efficient reuse of Reactome visualizations for users' own research presentations and publications.


CMap 1.01: a comparative mapping application for the Internet.

  • Ken Youens-Clark‎ et al.
  • Bioinformatics (Oxford, England)‎
  • 2009‎

CMap is a web-based tool for displaying and comparing maps of any type and from any species. A user can compare an unlimited number of maps, view pair-wise comparisons of known correspondences, and search for maps or for features by name, species, type and accession. CMap is freely available, can run on a variety of database engines and uses only free and open software components.


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